Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| all1866 | rbcL | gene:10493885 | gene:10493537 | Thioredoxin; ORF_ID:all1866; Belongs to the thioredoxin family. | Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily. | 0.663 |
| all1950 | alr0735 | gene:10493969 | gene:10492745 | Permease protein of ABC transporter; ORF_ID:all1950; Belongs to the binding-protein-dependent transport system permease family. | Urease accessory protein G; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG. | 0.762 |
| all1950 | ntcA | gene:10493969 | gene:10496441 | Permease protein of ABC transporter; ORF_ID:all1950; Belongs to the binding-protein-dependent transport system permease family. | Nitrogen-responsive regulatory protein; Required for full expression of proteins subject to ammonium repression. Transcriptional activator of genes subject to nitrogen control. | 0.409 |
| all2367 | rbcL | gene:10494397 | gene:10493537 | Thioredoxin; ORF_ID:all2367; Belongs to the thioredoxin family. | Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily. | 0.423 |
| alr0735 | all1950 | gene:10492745 | gene:10493969 | Urease accessory protein G; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG. | Permease protein of ABC transporter; ORF_ID:all1950; Belongs to the binding-protein-dependent transport system permease family. | 0.762 |
| alr0735 | ntcA | gene:10492745 | gene:10496441 | Urease accessory protein G; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG. | Nitrogen-responsive regulatory protein; Required for full expression of proteins subject to ammonium repression. Transcriptional activator of genes subject to nitrogen control. | 0.432 |
| alr2205 | alr3955 | gene:10494234 | gene:10495997 | Thioredoxin; ORF_ID:alr2205; Belongs to the thioredoxin family. | Thioredoxin; ORF_ID:alr3955. | 0.775 |
| alr2405 | petF | gene:10494435 | gene:10496196 | Flavodoxin; Low-potential electron donor to a number of redox enzymes; Belongs to the flavodoxin family. | Ferredoxin I; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions; Belongs to the 2Fe2S plant-type ferredoxin family. | 0.574 |
| alr3955 | alr2205 | gene:10495997 | gene:10494234 | Thioredoxin; ORF_ID:alr3955. | Thioredoxin; ORF_ID:alr2205; Belongs to the thioredoxin family. | 0.775 |
| alr3955 | rbcL | gene:10495997 | gene:10493537 | Thioredoxin; ORF_ID:alr3955. | Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily. | 0.423 |
| alr5065 | alr5066 | gene:10497123 | gene:10497124 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation; Belongs to the MurCDEF family. | UDP-N-acetylenolpyruvylglucosamine reductase; Cell wall formation. | 0.999 |
| alr5066 | alr5065 | gene:10497124 | gene:10497123 | UDP-N-acetylenolpyruvylglucosamine reductase; Cell wall formation. | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.999 |
| alr5066 | lrtA | gene:10497124 | gene:10495221 | UDP-N-acetylenolpyruvylglucosamine reductase; Cell wall formation. | Light-repressed protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | 0.457 |
| cynS | glnA | gene:10493305 | gene:10494357 | Cyanate lyase; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family. | Glutamate--ammonia ligase; Involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia; Belongs to the glutamine synthetase family. | 0.619 |
| cynS | glnB | gene:10493305 | gene:10494348 | Cyanate lyase; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family. | Nitrogen regulatory protein P-II; ORF_ID:all2319. | 0.587 |
| cynS | nirA | gene:10493305 | gene:10492618 | Cyanate lyase; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family. | Nitrite reductase; ORF_ID:alr0607; nirA gene product; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.731 |
| cynS | ntcA | gene:10493305 | gene:10496441 | Cyanate lyase; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family. | Nitrogen-responsive regulatory protein; Required for full expression of proteins subject to ammonium repression. Transcriptional activator of genes subject to nitrogen control. | 0.429 |
| glnA | cynS | gene:10494357 | gene:10493305 | Glutamate--ammonia ligase; Involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia; Belongs to the glutamine synthetase family. | Cyanate lyase; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family. | 0.619 |
| glnA | glnB | gene:10494357 | gene:10494348 | Glutamate--ammonia ligase; Involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia; Belongs to the glutamine synthetase family. | Nitrogen regulatory protein P-II; ORF_ID:all2319. | 0.962 |
| glnA | hetC | gene:10494357 | gene:10494851 | Glutamate--ammonia ligase; Involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia; Belongs to the glutamine synthetase family. | Heterocyst differentiation protein; ORF_ID:alr2817; hetC gene product. | 0.412 |
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