Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| glnB | nirA | gene:10494348 | gene:10492618 | Nitrogen regulatory protein P-II; ORF_ID:all2319. | Nitrite reductase; ORF_ID:alr0607; nirA gene product; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.856 |
| glnB | nrtA | gene:10494348 | gene:10492619 | Nitrogen regulatory protein P-II; ORF_ID:all2319. | Nitrate transport nitrate-binding protein; Part of the ABC transporter complex NrtABCD involved in nitrate uptake. The complex is probably also involved in nitrite transport. NrtA is the substrate-binding protein. | 0.470 |
| glnB | ntcB | gene:10494348 | gene:10492613 | Nitrogen regulatory protein P-II; ORF_ID:all2319. | Nitrogen assimilation transcriptional activator; ORF_ID:all0602; ntcB gene product; Belongs to the LysR transcriptional regulatory family. | 0.492 |
| hetC | hetR | gene:10494851 | gene:10494368 | Heterocyst differentiation protein; ORF_ID:alr2817; hetC gene product. | Heterocyst differentiation protein; Controls heterocyst differentiation. Has both a protease and a DNA-binding activity. Binds the promoter regions of hetR, hepA and patS. | 0.881 |
| hetR | hetC | gene:10494368 | gene:10494851 | Heterocyst differentiation protein; Controls heterocyst differentiation. Has both a protease and a DNA-binding activity. Binds the promoter regions of hetR, hepA and patS. | Heterocyst differentiation protein; ORF_ID:alr2817; hetC gene product. | 0.881 |
| hetR | ntcB | gene:10494368 | gene:10492613 | Heterocyst differentiation protein; Controls heterocyst differentiation. Has both a protease and a DNA-binding activity. Binds the promoter regions of hetR, hepA and patS. | Nitrogen assimilation transcriptional activator; ORF_ID:all0602; ntcB gene product; Belongs to the LysR transcriptional regulatory family. | 0.490 |
| nirA | glnB | gene:10492618 | gene:10494348 | Nitrite reductase; ORF_ID:alr0607; nirA gene product; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | Nitrogen regulatory protein P-II; ORF_ID:all2319. | 0.856 |
| nirA | nrtA | gene:10492618 | gene:10492619 | Nitrite reductase; ORF_ID:alr0607; nirA gene product; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | Nitrate transport nitrate-binding protein; Part of the ABC transporter complex NrtABCD involved in nitrate uptake. The complex is probably also involved in nitrite transport. NrtA is the substrate-binding protein. | 0.846 |
| nirA | nrtA-2 | gene:10492618 | gene:10495371 | Nitrite reductase; ORF_ID:alr0607; nirA gene product; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | Nitrate-binding protein; ORF_ID:all3333; nrtA gene product. | 0.673 |
| nirA | nrtB | gene:10492618 | gene:10492620 | Nitrite reductase; ORF_ID:alr0607; nirA gene product; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | Nitrate transport permease protein; ORF_ID:alr0609; nrtB gene product. | 0.685 |
| nirA | nrtB-2 | gene:10492618 | gene:10495325 | Nitrite reductase; ORF_ID:alr0607; nirA gene product; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | Nitrate transport protein; ORF_ID:alr3287; nrtB gene product. | 0.499 |
| nirA | nrtB-3 | gene:10492618 | gene:10495373 | Nitrite reductase; ORF_ID:alr0607; nirA gene product; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | ABC nitrate transport permease protein; ORF_ID:all3335; nrtB gene product. | 0.503 |
| nirA | nrtD | gene:10492618 | gene:10492622 | Nitrite reductase; ORF_ID:alr0607; nirA gene product; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | Nitrate transport ATP-binding protein; ORF_ID:alr0611; nrtD gene product. | 0.751 |
| nirA | ntcB | gene:10492618 | gene:10492613 | Nitrite reductase; ORF_ID:alr0607; nirA gene product; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | Nitrogen assimilation transcriptional activator; ORF_ID:all0602; ntcB gene product; Belongs to the LysR transcriptional regulatory family. | 0.608 |
| nrtA | glnB | gene:10492619 | gene:10494348 | Nitrate transport nitrate-binding protein; Part of the ABC transporter complex NrtABCD involved in nitrate uptake. The complex is probably also involved in nitrite transport. NrtA is the substrate-binding protein. | Nitrogen regulatory protein P-II; ORF_ID:all2319. | 0.470 |
| nrtA | nirA | gene:10492619 | gene:10492618 | Nitrate transport nitrate-binding protein; Part of the ABC transporter complex NrtABCD involved in nitrate uptake. The complex is probably also involved in nitrite transport. NrtA is the substrate-binding protein. | Nitrite reductase; ORF_ID:alr0607; nirA gene product; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.846 |
| nrtA | nrtA-2 | gene:10492619 | gene:10495371 | Nitrate transport nitrate-binding protein; Part of the ABC transporter complex NrtABCD involved in nitrate uptake. The complex is probably also involved in nitrite transport. NrtA is the substrate-binding protein. | Nitrate-binding protein; ORF_ID:all3333; nrtA gene product. | 0.904 |
| nrtA | nrtB | gene:10492619 | gene:10492620 | Nitrate transport nitrate-binding protein; Part of the ABC transporter complex NrtABCD involved in nitrate uptake. The complex is probably also involved in nitrite transport. NrtA is the substrate-binding protein. | Nitrate transport permease protein; ORF_ID:alr0609; nrtB gene product. | 0.999 |
| nrtA | nrtB-2 | gene:10492619 | gene:10495325 | Nitrate transport nitrate-binding protein; Part of the ABC transporter complex NrtABCD involved in nitrate uptake. The complex is probably also involved in nitrite transport. NrtA is the substrate-binding protein. | Nitrate transport protein; ORF_ID:alr3287; nrtB gene product. | 0.986 |
| nrtA | nrtB-3 | gene:10492619 | gene:10495373 | Nitrate transport nitrate-binding protein; Part of the ABC transporter complex NrtABCD involved in nitrate uptake. The complex is probably also involved in nitrite transport. NrtA is the substrate-binding protein. | ABC nitrate transport permease protein; ORF_ID:all3335; nrtB gene product. | 0.998 |
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