Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| all0441 | alr1414 | gene:10492450 | gene:10493429 | DNA topoisomerase chain A; ORF_ID:all0441. | Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. | 0.485 |
| all0441 | avaIM | gene:10492450 | gene:10495674 | DNA topoisomerase chain A; ORF_ID:all0441. | Site-specific DNA-methyltransferase (cytosine-specific); This methylase recognizes the double-stranded sequence CYCGRG, causes specific methylation on C-? on both strands, and protects the DNA from cleavage by the AvaI endonuclease; Belongs to the N(4)/N(6)-methyltransferase family. N(4) subfamily. | 0.657 |
| all0441 | clpB | gene:10492450 | gene:10493982 | DNA topoisomerase chain A; ORF_ID:all0441. | Endopeptidase Clp ATP-binding chain; ORF_ID:alr1963; Belongs to the ClpA/ClpB family. | 0.418 |
| all0441 | clpB-4 | gene:10492450 | gene:10497142 | DNA topoisomerase chain A; ORF_ID:all0441. | Endopeptidase Clp ATP-binding chain B; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase activity; ATP hydrolysis unfolds the denatured protein aggregates, which probably helps expose new hydrophobic binding sites on the surface of ClpB-bound aggregates, contributing to the solubilization and refolding of denatured protein aggregates by DnaK (By similarity). Belongs to the ClpA/ClpB [...] | 0.418 |
| all0441 | dnaJ-2 | gene:10492450 | gene:10494477 | DNA topoisomerase chain A; ORF_ID:all0441. | DnaJ protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and Gr [...] | 0.457 |
| all0441 | dnaK-2 | gene:10492450 | gene:10493760 | DNA topoisomerase chain A; ORF_ID:all0441. | DnaK-type molecular chaperone; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.458 |
| all0441 | dnaK-3 | gene:10492450 | gene:10494476 | DNA topoisomerase chain A; ORF_ID:all0441. | DnaK-type molecular chaperone; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.479 |
| all0441 | dnaK-4 | gene:10492450 | gene:10495026 | DNA topoisomerase chain A; ORF_ID:all0441. | DnaK-type molecular chaperone; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.483 |
| all0441 | gltS | gene:10492450 | gene:10496393 | DNA topoisomerase chain A; ORF_ID:all0441. | Ferredoxin-glutamate synthase; ORF_ID:alr4344. | 0.499 |
| all0860 | dnaJ-2 | gene:10492873 | gene:10494477 | DNA gyrase A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | DnaJ protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and Gr [...] | 0.448 |
| all0860 | dnaK-2 | gene:10492873 | gene:10493760 | DNA gyrase A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | DnaK-type molecular chaperone; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.564 |
| all0860 | dnaK-3 | gene:10492873 | gene:10494476 | DNA gyrase A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | DnaK-type molecular chaperone; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.577 |
| all0860 | dnaK-4 | gene:10492873 | gene:10495026 | DNA gyrase A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | DnaK-type molecular chaperone; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.602 |
| all0860 | dnaK-5 | gene:10492873 | gene:10496526 | DNA gyrase A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | DnaK-type molecular chaperone; ORF_ID:all4477; dnaK gene product; Belongs to the heat shock protein 70 family. | 0.518 |
| alr1414 | all0441 | gene:10493429 | gene:10492450 | Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. | DNA topoisomerase chain A; ORF_ID:all0441. | 0.485 |
| alr1414 | avaIM | gene:10493429 | gene:10495674 | Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. | Site-specific DNA-methyltransferase (cytosine-specific); This methylase recognizes the double-stranded sequence CYCGRG, causes specific methylation on C-? on both strands, and protects the DNA from cleavage by the AvaI endonuclease; Belongs to the N(4)/N(6)-methyltransferase family. N(4) subfamily. | 0.454 |
| alr1414 | desC | gene:10493429 | gene:10493615 | Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. | Delta-9 desaturase; ORF_ID:all1599; desC gene product. | 0.482 |
| alr1414 | desC-2 | gene:10493429 | gene:10497049 | Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. | Delta-9 desaturase; ORF_ID:all4991. | 0.481 |
| alr1414 | dnaK | gene:10493429 | gene:10493278 | Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. | DnaK-type molecular chaperone; ORF_ID:alr1264; dnaK gene product; Belongs to the heat shock protein 70 family. | 0.474 |
| alr1414 | dnaK-2 | gene:10493429 | gene:10493760 | Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. | DnaK-type molecular chaperone; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.418 |
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