Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| alr2485 | alr4255 | gene:10494516 | gene:10496304 | NH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | Glutamate dehydrogenase; ORF_ID:alr4255; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.920 |
| alr2485 | glnA | gene:10494516 | gene:10494357 | NH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | Glutamate--ammonia ligase; Involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia; Belongs to the glutamine synthetase family. | 0.795 |
| alr2485 | glnB | gene:10494516 | gene:10494348 | NH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | Nitrogen regulatory protein P-II; ORF_ID:all2319. | 0.788 |
| alr2485 | nifH | gene:10494516 | gene:10493469 | NH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein. | 0.458 |
| alr2485 | nirA | gene:10494516 | gene:10492618 | NH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | Nitrite reductase; ORF_ID:alr0607; nirA gene product; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.727 |
| alr4255 | alr2485 | gene:10496304 | gene:10494516 | Glutamate dehydrogenase; ORF_ID:alr4255; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | NH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | 0.920 |
| alr4255 | glnA | gene:10496304 | gene:10494357 | Glutamate dehydrogenase; ORF_ID:alr4255; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Glutamate--ammonia ligase; Involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia; Belongs to the glutamine synthetase family. | 0.967 |
| alr4255 | glnB | gene:10496304 | gene:10494348 | Glutamate dehydrogenase; ORF_ID:alr4255; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Nitrogen regulatory protein P-II; ORF_ID:all2319. | 0.579 |
| alr4255 | nifH | gene:10496304 | gene:10493469 | Glutamate dehydrogenase; ORF_ID:alr4255; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein. | 0.926 |
| alr4255 | nirA | gene:10496304 | gene:10492618 | Glutamate dehydrogenase; ORF_ID:alr4255; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Nitrite reductase; ORF_ID:alr0607; nirA gene product; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.966 |
| glnA | alr2485 | gene:10494357 | gene:10494516 | Glutamate--ammonia ligase; Involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia; Belongs to the glutamine synthetase family. | NH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | 0.795 |
| glnA | alr4255 | gene:10494357 | gene:10496304 | Glutamate--ammonia ligase; Involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia; Belongs to the glutamine synthetase family. | Glutamate dehydrogenase; ORF_ID:alr4255; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.967 |
| glnA | glnB | gene:10494357 | gene:10494348 | Glutamate--ammonia ligase; Involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia; Belongs to the glutamine synthetase family. | Nitrogen regulatory protein P-II; ORF_ID:all2319. | 0.962 |
| glnA | nifH | gene:10494357 | gene:10493469 | Glutamate--ammonia ligase; Involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia; Belongs to the glutamine synthetase family. | Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein. | 0.968 |
| glnA | nirA | gene:10494357 | gene:10492618 | Glutamate--ammonia ligase; Involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia; Belongs to the glutamine synthetase family. | Nitrite reductase; ORF_ID:alr0607; nirA gene product; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.994 |
| glnB | alr2485 | gene:10494348 | gene:10494516 | Nitrogen regulatory protein P-II; ORF_ID:all2319. | NH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | 0.788 |
| glnB | alr4255 | gene:10494348 | gene:10496304 | Nitrogen regulatory protein P-II; ORF_ID:all2319. | Glutamate dehydrogenase; ORF_ID:alr4255; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.579 |
| glnB | glnA | gene:10494348 | gene:10494357 | Nitrogen regulatory protein P-II; ORF_ID:all2319. | Glutamate--ammonia ligase; Involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia; Belongs to the glutamine synthetase family. | 0.962 |
| glnB | nifH | gene:10494348 | gene:10493469 | Nitrogen regulatory protein P-II; ORF_ID:all2319. | Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein. | 0.680 |
| glnB | nirA | gene:10494348 | gene:10492618 | Nitrogen regulatory protein P-II; ORF_ID:all2319. | Nitrite reductase; ORF_ID:alr0607; nirA gene product; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.856 |
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