Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| alr2205 | alr3955 | gene:10494234 | gene:10495997 | Thioredoxin; ORF_ID:alr2205; Belongs to the thioredoxin family. | Thioredoxin; ORF_ID:alr3955. | 0.775 |
| alr2765 | alr5103 | gene:10494799 | gene:10497162 | Aminotransferase; ORF_ID:alr2765. | Aminotransferase; Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL- diaminopimelate. | 0.900 |
| alr2765 | glnA | gene:10494799 | gene:10494357 | Aminotransferase; ORF_ID:alr2765. | Glutamate--ammonia ligase; Involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia; Belongs to the glutamine synthetase family. | 0.718 |
| alr3955 | alr2205 | gene:10495997 | gene:10494234 | Thioredoxin; ORF_ID:alr3955. | Thioredoxin; ORF_ID:alr2205; Belongs to the thioredoxin family. | 0.775 |
| alr4853 | glnA | gene:10496907 | gene:10494357 | Aspartate aminotransferase; ORF_ID:alr4853. | Glutamate--ammonia ligase; Involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia; Belongs to the glutamine synthetase family. | 0.723 |
| alr4853 | icd | gene:10496907 | gene:10493845 | Aspartate aminotransferase; ORF_ID:alr4853. | Isocitrate dehydrogenase; ORF_ID:alr1827; icd gene product. | 0.831 |
| alr5103 | alr2765 | gene:10497162 | gene:10494799 | Aminotransferase; Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL- diaminopimelate. | Aminotransferase; ORF_ID:alr2765. | 0.900 |
| alr5103 | glnA | gene:10497162 | gene:10494357 | Aminotransferase; Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL- diaminopimelate. | Glutamate--ammonia ligase; Involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia; Belongs to the glutamine synthetase family. | 0.716 |
| glnA | alr2765 | gene:10494357 | gene:10494799 | Glutamate--ammonia ligase; Involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia; Belongs to the glutamine synthetase family. | Aminotransferase; ORF_ID:alr2765. | 0.718 |
| glnA | alr4853 | gene:10494357 | gene:10496907 | Glutamate--ammonia ligase; Involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia; Belongs to the glutamine synthetase family. | Aspartate aminotransferase; ORF_ID:alr4853. | 0.723 |
| glnA | alr5103 | gene:10494357 | gene:10497162 | Glutamate--ammonia ligase; Involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia; Belongs to the glutamine synthetase family. | Aminotransferase; Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL- diaminopimelate. | 0.716 |
| glnA | glnB | gene:10494357 | gene:10494348 | Glutamate--ammonia ligase; Involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia; Belongs to the glutamine synthetase family. | Nitrogen regulatory protein P-II; ORF_ID:all2319. | 0.962 |
| glnA | icd | gene:10494357 | gene:10493845 | Glutamate--ammonia ligase; Involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia; Belongs to the glutamine synthetase family. | Isocitrate dehydrogenase; ORF_ID:alr1827; icd gene product. | 0.818 |
| glnA | nirA | gene:10494357 | gene:10492618 | Glutamate--ammonia ligase; Involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia; Belongs to the glutamine synthetase family. | Nitrite reductase; ORF_ID:alr0607; nirA gene product; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.994 |
| glnA | ntcA | gene:10494357 | gene:10496441 | Glutamate--ammonia ligase; Involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia; Belongs to the glutamine synthetase family. | Nitrogen-responsive regulatory protein; Required for full expression of proteins subject to ammonium repression. Transcriptional activator of genes subject to nitrogen control. | 0.918 |
| glnA | rbcS | gene:10494357 | gene:10493539 | Glutamate--ammonia ligase; Involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia; Belongs to the glutamine synthetase family. | Ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site (By similarity); Belongs to the RuBisCO small chain family. | 0.575 |
| glnB | glnA | gene:10494348 | gene:10494357 | Nitrogen regulatory protein P-II; ORF_ID:all2319. | Glutamate--ammonia ligase; Involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia; Belongs to the glutamine synthetase family. | 0.962 |
| glnB | icd | gene:10494348 | gene:10493845 | Nitrogen regulatory protein P-II; ORF_ID:all2319. | Isocitrate dehydrogenase; ORF_ID:alr1827; icd gene product. | 0.740 |
| glnB | nirA | gene:10494348 | gene:10492618 | Nitrogen regulatory protein P-II; ORF_ID:all2319. | Nitrite reductase; ORF_ID:alr0607; nirA gene product; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.856 |
| glnB | ntcA | gene:10494348 | gene:10496441 | Nitrogen regulatory protein P-II; ORF_ID:all2319. | Nitrogen-responsive regulatory protein; Required for full expression of proteins subject to ammonium repression. Transcriptional activator of genes subject to nitrogen control. | 0.922 |
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