Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| agp | alr0819 | gene:10496696 | gene:10492830 | Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc. | ORF_ID:alr0819; putative invertase. | 0.634 |
| agp | glgB | gene:10496696 | gene:10492723 | Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc. | 1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily. | 0.994 |
| agp | gltA | gene:10496696 | gene:10492229 | Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc. | Citrate synthase; ORF_ID:alr0222; gltA gene product; Belongs to the citrate synthase family. | 0.750 |
| agp | icd | gene:10496696 | gene:10493845 | Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc. | Isocitrate dehydrogenase; ORF_ID:alr1827; icd gene product. | 0.451 |
| all1368 | glnA | gene:10493383 | gene:10494357 | Amidotransferase; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF. | Glutamate--ammonia ligase; Involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia; Belongs to the glutamine synthetase family. | 0.730 |
| all1368 | gltA | gene:10493383 | gene:10492229 | Amidotransferase; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF. | Citrate synthase; ORF_ID:alr0222; gltA gene product; Belongs to the citrate synthase family. | 0.444 |
| all1368 | ntcA | gene:10493383 | gene:10496441 | Amidotransferase; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF. | Nitrogen-responsive regulatory protein; Required for full expression of proteins subject to ammonium repression. Transcriptional activator of genes subject to nitrogen control. | 0.480 |
| all1866 | ccmM | gene:10493885 | gene:10492878 | Thioredoxin; ORF_ID:all1866; Belongs to the thioredoxin family. | Carbon dioxide concentrating mechanism protein; ORF_ID:all0865; ccmM gene product. | 0.654 |
| all1893 | ccmM | gene:10493912 | gene:10492878 | Thioredoxin; ORF_ID:all1893; Belongs to the thioredoxin family. | Carbon dioxide concentrating mechanism protein; ORF_ID:all0865; ccmM gene product. | 0.654 |
| all2367 | ccmM | gene:10494397 | gene:10492878 | Thioredoxin; ORF_ID:all2367; Belongs to the thioredoxin family. | Carbon dioxide concentrating mechanism protein; ORF_ID:all0865; ccmM gene product. | 0.654 |
| alr0819 | agp | gene:10492830 | gene:10496696 | ORF_ID:alr0819; putative invertase. | Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc. | 0.634 |
| alr0819 | glgB | gene:10492830 | gene:10492723 | ORF_ID:alr0819; putative invertase. | 1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily. | 0.553 |
| alr0819 | ntcA | gene:10492830 | gene:10496441 | ORF_ID:alr0819; putative invertase. | Nitrogen-responsive regulatory protein; Required for full expression of proteins subject to ammonium repression. Transcriptional activator of genes subject to nitrogen control. | 0.409 |
| alr2205 | alr3955 | gene:10494234 | gene:10495997 | Thioredoxin; ORF_ID:alr2205; Belongs to the thioredoxin family. | Thioredoxin; ORF_ID:alr3955. | 0.775 |
| alr2205 | ccmM | gene:10494234 | gene:10492878 | Thioredoxin; ORF_ID:alr2205; Belongs to the thioredoxin family. | Carbon dioxide concentrating mechanism protein; ORF_ID:all0865; ccmM gene product. | 0.654 |
| alr3952 | hepA | gene:10495994 | gene:10494869 | Transcriptional regulator; ORF_ID:alr3952. | ATP-binding protein; Acts early in the process of morphological differentiation of heterocysts. | 0.495 |
| alr3952 | hetR | gene:10495994 | gene:10494368 | Transcriptional regulator; ORF_ID:alr3952. | Heterocyst differentiation protein; Controls heterocyst differentiation. Has both a protease and a DNA-binding activity. Binds the promoter regions of hetR, hepA and patS. | 0.605 |
| alr3952 | nifB | gene:10495994 | gene:10493530 | Transcriptional regulator; ORF_ID:alr3952. | Nitrogen fixation protein; Involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co or M-cluster) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing microorganisms. NifB catalyzes the crucial step of radical SAM-dependent carbide insertion that occurs concomitant with the insertion of a 9th sulfur and the rearrangement/coupling of two [4Fe-4S] clusters into a [8Fe-9S-C] cluster, the precursor to the M-cluster. | 0.521 |
| alr3955 | alr2205 | gene:10495997 | gene:10494234 | Thioredoxin; ORF_ID:alr3955. | Thioredoxin; ORF_ID:alr2205; Belongs to the thioredoxin family. | 0.775 |
| alr3955 | ccmM | gene:10495997 | gene:10492878 | Thioredoxin; ORF_ID:alr3955. | Carbon dioxide concentrating mechanism protein; ORF_ID:all0865; ccmM gene product. | 0.654 |
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