Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| glnA | gltS | gene:10494357 | gene:10496393 | Glutamate--ammonia ligase; Involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia; Belongs to the glutamine synthetase family. | Ferredoxin-glutamate synthase; ORF_ID:alr4344. | 0.993 |
| glnA | hetR | gene:10494357 | gene:10494368 | Glutamate--ammonia ligase; Involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia; Belongs to the glutamine synthetase family. | Heterocyst differentiation protein; Controls heterocyst differentiation. Has both a protease and a DNA-binding activity. Binds the promoter regions of hetR, hepA and patS. | 0.658 |
| glnA | narB | gene:10494357 | gene:10492623 | Glutamate--ammonia ligase; Involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia; Belongs to the glutamine synthetase family. | Nitrate reductase; ORF_ID:alr0612; narB gene product; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily. | 0.727 |
| glnA | nifH | gene:10494357 | gene:10493469 | Glutamate--ammonia ligase; Involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia; Belongs to the glutamine synthetase family. | Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein. | 0.968 |
| glnA | nirA | gene:10494357 | gene:10492618 | Glutamate--ammonia ligase; Involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia; Belongs to the glutamine synthetase family. | Nitrite reductase; ORF_ID:alr0607; nirA gene product; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.994 |
| glnA | ntcA | gene:10494357 | gene:10496441 | Glutamate--ammonia ligase; Involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia; Belongs to the glutamine synthetase family. | Nitrogen-responsive regulatory protein; Required for full expression of proteins subject to ammonium repression. Transcriptional activator of genes subject to nitrogen control. | 0.918 |
| gltS | glnA | gene:10496393 | gene:10494357 | Ferredoxin-glutamate synthase; ORF_ID:alr4344. | Glutamate--ammonia ligase; Involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia; Belongs to the glutamine synthetase family. | 0.993 |
| gltS | hepA | gene:10496393 | gene:10494869 | Ferredoxin-glutamate synthase; ORF_ID:alr4344. | ATP-binding protein; Acts early in the process of morphological differentiation of heterocysts. | 0.438 |
| gltS | narB | gene:10496393 | gene:10492623 | Ferredoxin-glutamate synthase; ORF_ID:alr4344. | Nitrate reductase; ORF_ID:alr0612; narB gene product; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily. | 0.773 |
| gltS | nifH | gene:10496393 | gene:10493469 | Ferredoxin-glutamate synthase; ORF_ID:alr4344. | Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein. | 0.551 |
| gltS | nirA | gene:10496393 | gene:10492618 | Ferredoxin-glutamate synthase; ORF_ID:alr4344. | Nitrite reductase; ORF_ID:alr0607; nirA gene product; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.632 |
| gltS | ntcA | gene:10496393 | gene:10496441 | Ferredoxin-glutamate synthase; ORF_ID:alr4344. | Nitrogen-responsive regulatory protein; Required for full expression of proteins subject to ammonium repression. Transcriptional activator of genes subject to nitrogen control. | 0.465 |
| hepA | gltS | gene:10494869 | gene:10496393 | ATP-binding protein; Acts early in the process of morphological differentiation of heterocysts. | Ferredoxin-glutamate synthase; ORF_ID:alr4344. | 0.438 |
| hepA | hetR | gene:10494869 | gene:10494368 | ATP-binding protein; Acts early in the process of morphological differentiation of heterocysts. | Heterocyst differentiation protein; Controls heterocyst differentiation. Has both a protease and a DNA-binding activity. Binds the promoter regions of hetR, hepA and patS. | 0.760 |
| hepA | nifH | gene:10494869 | gene:10493469 | ATP-binding protein; Acts early in the process of morphological differentiation of heterocysts. | Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein. | 0.480 |
| hepA | ntcA | gene:10494869 | gene:10496441 | ATP-binding protein; Acts early in the process of morphological differentiation of heterocysts. | Nitrogen-responsive regulatory protein; Required for full expression of proteins subject to ammonium repression. Transcriptional activator of genes subject to nitrogen control. | 0.481 |
| hetR | glnA | gene:10494368 | gene:10494357 | Heterocyst differentiation protein; Controls heterocyst differentiation. Has both a protease and a DNA-binding activity. Binds the promoter regions of hetR, hepA and patS. | Glutamate--ammonia ligase; Involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia; Belongs to the glutamine synthetase family. | 0.658 |
| hetR | hepA | gene:10494368 | gene:10494869 | Heterocyst differentiation protein; Controls heterocyst differentiation. Has both a protease and a DNA-binding activity. Binds the promoter regions of hetR, hepA and patS. | ATP-binding protein; Acts early in the process of morphological differentiation of heterocysts. | 0.760 |
| hetR | nifH | gene:10494368 | gene:10493469 | Heterocyst differentiation protein; Controls heterocyst differentiation. Has both a protease and a DNA-binding activity. Binds the promoter regions of hetR, hepA and patS. | Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein. | 0.760 |
| hetR | ntcA | gene:10494368 | gene:10496441 | Heterocyst differentiation protein; Controls heterocyst differentiation. Has both a protease and a DNA-binding activity. Binds the promoter regions of hetR, hepA and patS. | Nitrogen-responsive regulatory protein; Required for full expression of proteins subject to ammonium repression. Transcriptional activator of genes subject to nitrogen control. | 0.918 |
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