(15 nodes) (2023) Characterization of a novel thermophilic cyanobacterium within Trichocoleusaceae, Trichothermofontia sichuanensis gen. et sp. nov., and its CO2-concentrating mechanism. network (Nostoc sp. PCC7120)

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Your Input:
	rbcS	Ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site (By similarity); Belongs to the RuBisCO small chain family. (109 aa)
	gvpC	Gas vesicle protein; May confer stability to the gas vesicle membranes. Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. (129 aa)
	gvpB	Gas vesicle protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure (By similarity). (71 aa)
	gvpA	Gas vesicle protein; ORF_ID:asl2254; gvpA gene product. (71 aa)
	all2506	Cyanophycinase; Exopeptidase that catalyzes the hydrolytic cleavage of multi- L-arginyl-poly-L-aspartic acid (cyanophycin; a water-insoluble reserve polymer) into aspartate-arginine dipeptides. (323 aa)
	cphA-2	Cyanophycin synthetase; Catalyzes the ATP-dependent polymerization of arginine and aspartate to multi-L-arginyl-poly-L-aspartic acid (cyanophycin; a water-insoluble reserve polymer); In the C-terminal section; belongs to the MurCDEF family. (901 aa)
	cphB	Cyanophycinase; Exopeptidase that catalyzes the hydrolytic cleavage of multi- L-arginyl-poly-L-aspartic acid (cyanophycin; a water-insoluble reserve polymer) into aspartate-arginine dipeptides. (298 aa)
	ndhF-3	NADH dehydrogenase subunit 5; ORF_ID:alr4156. (620 aa)
	ndhD-4	NADH dehydrogenase subunit 4; ORF_ID:alr4157. (500 aa)
	all0571	Cyanophycinase; Exopeptidase that catalyzes the hydrolytic cleavage of multi- L-arginyl-poly-L-aspartic acid (cyanophycin; a water-insoluble reserve polymer) into aspartate-arginine dipeptides. (293 aa)
	ccmK-2	Carbon dioxide concentrating mechanism protein; ORF_ID:all0863; ccmK gene product. (271 aa)
	ccmM	Carbon dioxide concentrating mechanism protein; ORF_ID:all0865; ccmM gene product. (555 aa)
	ccmL	Carbon dioxide concentrating mechanism protein; ORF_ID:all0866; ccmL gene product. (101 aa)
	ccmK-4	Carbon dioxide concentrating mechanism protein; ORF_ID:all0868; ccmK gene product. (102 aa)
	rbcL	Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily. (476 aa)

Your Current Organism:

Nostoc sp. PCC7120

NCBI taxonomy Id: 103690
Other names: Anabaena sp. (ATCC 27893), Anabaena sp. (PCC 7120), Anabaena sp. DCC D0672, Anabaena sp. PCC 7120, Anabaena sp. SAG 25.82, Anabaena sp. UTEX B 2576, Anabaena variabilis UTCC 387, N. sp. PCC 7120, Nostoc muscorum ISU, Nostoc sp. AKM24, Nostoc sp. ATCC 27347, Nostoc sp. ATCC 72893, Nostoc sp. DSM 107007, Nostoc sp. Ind43, Nostoc sp. PCC 7120, Nostoc sp. SAG 25.82

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
all0571	cphA-2	gene:10492582	gene:10495921	Cyanophycinase; Exopeptidase that catalyzes the hydrolytic cleavage of multi- L-arginyl-poly-L-aspartic acid (cyanophycin; a water-insoluble reserve polymer) into aspartate-arginine dipeptides.	Cyanophycin synthetase; Catalyzes the ATP-dependent polymerization of arginine and aspartate to multi-L-arginyl-poly-L-aspartic acid (cyanophycin; a water-insoluble reserve polymer); In the C-terminal section; belongs to the MurCDEF family.	0.982
all2506	cphA-2	gene:10494537	gene:10495921	Cyanophycinase; Exopeptidase that catalyzes the hydrolytic cleavage of multi- L-arginyl-poly-L-aspartic acid (cyanophycin; a water-insoluble reserve polymer) into aspartate-arginine dipeptides.	Cyanophycin synthetase; Catalyzes the ATP-dependent polymerization of arginine and aspartate to multi-L-arginyl-poly-L-aspartic acid (cyanophycin; a water-insoluble reserve polymer); In the C-terminal section; belongs to the MurCDEF family.	0.983
ccmK-2	ccmK-4	gene:10492876	gene:10492881	Carbon dioxide concentrating mechanism protein; ORF_ID:all0863; ccmK gene product.	Carbon dioxide concentrating mechanism protein; ORF_ID:all0868; ccmK gene product.	0.637
ccmK-2	ccmL	gene:10492876	gene:10492879	Carbon dioxide concentrating mechanism protein; ORF_ID:all0863; ccmK gene product.	Carbon dioxide concentrating mechanism protein; ORF_ID:all0866; ccmL gene product.	0.997
ccmK-2	ccmM	gene:10492876	gene:10492878	Carbon dioxide concentrating mechanism protein; ORF_ID:all0863; ccmK gene product.	Carbon dioxide concentrating mechanism protein; ORF_ID:all0865; ccmM gene product.	0.974
ccmK-2	cphA-2	gene:10492876	gene:10495921	Carbon dioxide concentrating mechanism protein; ORF_ID:all0863; ccmK gene product.	Cyanophycin synthetase; Catalyzes the ATP-dependent polymerization of arginine and aspartate to multi-L-arginyl-poly-L-aspartic acid (cyanophycin; a water-insoluble reserve polymer); In the C-terminal section; belongs to the MurCDEF family.	0.476
ccmK-2	ndhF-3	gene:10492876	gene:10496204	Carbon dioxide concentrating mechanism protein; ORF_ID:all0863; ccmK gene product.	NADH dehydrogenase subunit 5; ORF_ID:alr4156.	0.457
ccmK-2	rbcL	gene:10492876	gene:10493537	Carbon dioxide concentrating mechanism protein; ORF_ID:all0863; ccmK gene product.	Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily.	0.538
ccmK-2	rbcS	gene:10492876	gene:10493539	Carbon dioxide concentrating mechanism protein; ORF_ID:all0863; ccmK gene product.	Ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site (By similarity); Belongs to the RuBisCO small chain family.	0.708
ccmK-4	ccmK-2	gene:10492881	gene:10492876	Carbon dioxide concentrating mechanism protein; ORF_ID:all0868; ccmK gene product.	Carbon dioxide concentrating mechanism protein; ORF_ID:all0863; ccmK gene product.	0.637
ccmK-4	ccmL	gene:10492881	gene:10492879	Carbon dioxide concentrating mechanism protein; ORF_ID:all0868; ccmK gene product.	Carbon dioxide concentrating mechanism protein; ORF_ID:all0866; ccmL gene product.	0.998
ccmK-4	ccmM	gene:10492881	gene:10492878	Carbon dioxide concentrating mechanism protein; ORF_ID:all0868; ccmK gene product.	Carbon dioxide concentrating mechanism protein; ORF_ID:all0865; ccmM gene product.	0.967
ccmK-4	rbcL	gene:10492881	gene:10493537	Carbon dioxide concentrating mechanism protein; ORF_ID:all0868; ccmK gene product.	Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily.	0.665
ccmK-4	rbcS	gene:10492881	gene:10493539	Carbon dioxide concentrating mechanism protein; ORF_ID:all0868; ccmK gene product.	Ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site (By similarity); Belongs to the RuBisCO small chain family.	0.791
ccmL	ccmK-2	gene:10492879	gene:10492876	Carbon dioxide concentrating mechanism protein; ORF_ID:all0866; ccmL gene product.	Carbon dioxide concentrating mechanism protein; ORF_ID:all0863; ccmK gene product.	0.997
ccmL	ccmK-4	gene:10492879	gene:10492881	Carbon dioxide concentrating mechanism protein; ORF_ID:all0866; ccmL gene product.	Carbon dioxide concentrating mechanism protein; ORF_ID:all0868; ccmK gene product.	0.998
ccmL	ccmM	gene:10492879	gene:10492878	Carbon dioxide concentrating mechanism protein; ORF_ID:all0866; ccmL gene product.	Carbon dioxide concentrating mechanism protein; ORF_ID:all0865; ccmM gene product.	0.981
ccmL	ndhF-3	gene:10492879	gene:10496204	Carbon dioxide concentrating mechanism protein; ORF_ID:all0866; ccmL gene product.	NADH dehydrogenase subunit 5; ORF_ID:alr4156.	0.479
ccmL	rbcL	gene:10492879	gene:10493537	Carbon dioxide concentrating mechanism protein; ORF_ID:all0866; ccmL gene product.	Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily.	0.654
ccmL	rbcS	gene:10492879	gene:10493539	Carbon dioxide concentrating mechanism protein; ORF_ID:all0866; ccmL gene product.	Ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site (By similarity); Belongs to the RuBisCO small chain family.	0.766

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