(22 nodes) Protein targeting to ER network (Tilletiaria anomala)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A066VTT1	Uncharacterized protein. (293 aa)
	A0A066VXE7	Signal recognition particle, SRP19 subunit. (347 aa)
	A0A066VXS1	Uncharacterized protein. (188 aa)
	A0A066VZZ8	Protein translocase SEC6. (70 aa)
	A0A066W7D4	Putative PHO88-involved in phosphate transport. (191 aa)
	A0A066WE74	Uncharacterized protein. (430 aa)
	A0A066WEM7	TPR-like protein. (236 aa)
	A0A066WFJ5	Uncharacterized protein. (454 aa)
	A0A066WGC0	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum. (121 aa)
	A0A066WGU3	SRP54 domain-containing protein. (762 aa)
	A0A066WK48	SecY protein. (466 aa)
	A0A066WKY6	TPR-like protein. (207 aa)
	A0A066VJH1	Uncharacterized protein. (348 aa)
	A0A066VH80	Uncharacterized protein. (527 aa)
	A0A066VEU9	Nascent polypeptide-associated complex, alpha subunit. (199 aa)
	A0A066VD80	Signal recognition particle, SRP9/SRP14 subunit. (153 aa)
	A0A066VCW4	Signal recognition particle protein. (622 aa)
	A0A066V4R1	Microsomal signal peptidase 12 kDa subunit. (90 aa)
	A0A066VK05	Uncharacterized protein. (817 aa)
	A0A066VK96	Uncharacterized protein. (259 aa)
	A0A066VMB6	Translocation protein. (308 aa)
	A0A066VRL1	Signal peptidase subunit 3. (193 aa)

Your Current Organism:

Tilletiaria anomala

NCBI taxonomy Id: 1037660
Other names: T. anomala UBC 951, Tilletiaria anomala ATCC 24038, Tilletiaria anomala CBS 436.72, Tilletiaria anomala UBC 951

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A066V4R1	A0A066VCW4	Microsomal signal peptidase 12 kDa subunit.	Signal recognition particle protein.	0.459
A0A066V4R1	A0A066VD80	Microsomal signal peptidase 12 kDa subunit.	Signal recognition particle, SRP9/SRP14 subunit.	0.465
A0A066V4R1	A0A066VK96	Microsomal signal peptidase 12 kDa subunit.	Uncharacterized protein.	0.993
A0A066V4R1	A0A066VMB6	Microsomal signal peptidase 12 kDa subunit.	Translocation protein.	0.565
A0A066V4R1	A0A066VRL1	Microsomal signal peptidase 12 kDa subunit.	Signal peptidase subunit 3.	0.989
A0A066V4R1	A0A066VXE7	Microsomal signal peptidase 12 kDa subunit.	Signal recognition particle, SRP19 subunit.	0.537
A0A066V4R1	A0A066VXS1	Microsomal signal peptidase 12 kDa subunit.	Uncharacterized protein.	0.468
A0A066V4R1	A0A066VZZ8	Microsomal signal peptidase 12 kDa subunit.	Protein translocase SEC6.	0.617
A0A066V4R1	A0A066WGC0	Microsomal signal peptidase 12 kDa subunit.	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.	0.645
A0A066VCW4	A0A066V4R1	Signal recognition particle protein.	Microsomal signal peptidase 12 kDa subunit.	0.459
A0A066VCW4	A0A066VD80	Signal recognition particle protein.	Signal recognition particle, SRP9/SRP14 subunit.	0.999
A0A066VCW4	A0A066VEU9	Signal recognition particle protein.	Nascent polypeptide-associated complex, alpha subunit.	0.735
A0A066VCW4	A0A066VK05	Signal recognition particle protein.	Uncharacterized protein.	0.999
A0A066VCW4	A0A066VK96	Signal recognition particle protein.	Uncharacterized protein.	0.428
A0A066VCW4	A0A066VXE7	Signal recognition particle protein.	Signal recognition particle, SRP19 subunit.	0.999
A0A066VCW4	A0A066VXS1	Signal recognition particle protein.	Uncharacterized protein.	0.999
A0A066VCW4	A0A066VZZ8	Signal recognition particle protein.	Protein translocase SEC6.	0.465
A0A066VCW4	A0A066WE74	Signal recognition particle protein.	Uncharacterized protein.	0.933
A0A066VCW4	A0A066WGC0	Signal recognition particle protein.	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.	0.661
A0A066VCW4	A0A066WGU3	Signal recognition particle protein.	SRP54 domain-containing protein.	0.997