(12 nodes) CheW-like domain network (Pseudomonas frederiksbergensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APV40988.1	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology. (178 aa)
	APV38570.1	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)
	APV41409.1	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa)
	APV41404.1	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology. (745 aa)
	APV40250.1	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology. (182 aa)
	APV40252.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (1968 aa)
	APV40253.1	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (152 aa)
	APV40909.1	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology. (300 aa)
	APV38348.1	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology. (311 aa)
	APV41410.1	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology. (161 aa)
	APV40991.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (762 aa)
	APV40990.1	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)

Your Current Organism:

Pseudomonas frederiksbergensis

NCBI taxonomy Id: 104087
Other names: ATCC BAA-257, CIP 106887, DSM 13022, LMG 19851, LMG:19851, P. frederiksbergensis, Pseudomonas frederiksbergensis Andersen et al. 2000, Pseudomonas sp. BDR1P1B1, Pseudomonas sp. BDR1P1B2, Pseudomonas sp. V1D5a, strain JAJ28

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APV38348.1	APV38570.1	PFAS1_02960	PFAS1_04145	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.972
APV38348.1	APV40250.1	PFAS1_02960	PFAS1_13135	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.555
APV38348.1	APV40252.1	PFAS1_02960	PFAS1_13145	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.977
APV38348.1	APV40909.1	PFAS1_02960	PFAS1_16720	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.975
APV38348.1	APV40988.1	PFAS1_02960	PFAS1_17135	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.655
APV38348.1	APV40991.1	PFAS1_02960	PFAS1_17150	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.978
APV38348.1	APV41404.1	PFAS1_02960	PFAS1_19330	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
APV38348.1	APV41409.1	PFAS1_02960	PFAS1_19355	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.930
APV38348.1	APV41410.1	PFAS1_02960	PFAS1_19360	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.836
APV38570.1	APV38348.1	PFAS1_04145	PFAS1_02960	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.972
APV38570.1	APV40250.1	PFAS1_04145	PFAS1_13135	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.557
APV38570.1	APV40252.1	PFAS1_04145	PFAS1_13145	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
APV38570.1	APV40909.1	PFAS1_04145	PFAS1_16720	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.973
APV38570.1	APV40988.1	PFAS1_04145	PFAS1_17135	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.580
APV38570.1	APV40991.1	PFAS1_04145	PFAS1_17150	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
APV38570.1	APV41404.1	PFAS1_04145	PFAS1_19330	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
APV38570.1	APV41409.1	PFAS1_04145	PFAS1_19355	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.949
APV38570.1	APV41410.1	PFAS1_04145	PFAS1_19360	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.855
APV40250.1	APV38348.1	PFAS1_13135	PFAS1_02960	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.555
APV40250.1	APV38570.1	PFAS1_13135	PFAS1_04145	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.557

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