(46 nodes) Oxidoreductase activity, acting on the aldehyde or oxo group of donors network (Bradyrhizobium sp. ARR65)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000472385_00562	Unannotated protein. (615 aa)
	GCA_000472385_00525	Unannotated protein. (921 aa)
	GCA_000472385_00508	Unannotated protein. (335 aa)
	GCA_000472385_00135	Unannotated protein. (477 aa)
	GCA_000472385_05842	Unannotated protein. (985 aa)
	GCA_000472385_05703	Unannotated protein. (769 aa)
	GCA_000472385_05625	Unannotated protein. (345 aa)
	GCA_000472385_05514	Unannotated protein. (338 aa)
	GCA_000472385_05239	Unannotated protein. (289 aa)
	GCA_000472385_04950	Unannotated protein. (498 aa)
	GCA_000472385_04673	Unannotated protein. (490 aa)
	GCA_000472385_04655	Unannotated protein. (149 aa)
	GCA_000472385_04139	Unannotated protein. (498 aa)
	GCA_000472385_04061	Unannotated protein. (349 aa)
	GCA_000472385_03926	Unannotated protein. (497 aa)
	GCA_000472385_03393	Unannotated protein. (495 aa)
	GCA_000472385_03003	Unannotated protein. (512 aa)
	GCA_000472385_07804	Unannotated protein. (325 aa)
	GCA_000472385_07537	Unannotated protein. (458 aa)
	GCA_000472385_07350	Unannotated protein. (217 aa)
	GCA_000472385_07224	Unannotated protein. (265 aa)
	GCA_000472385_07223	Unannotated protein. (229 aa)
	GCA_000472385_02897	Unannotated protein. (336 aa)
	GCA_000472385_02895	Unannotated protein. (981 aa)
	GCA_000472385_02348	Unannotated protein. (80 aa)
	GCA_000472385_02347	Unannotated protein. (112 aa)
	GCA_000472385_01929	Unannotated protein. (335 aa)
	GCA_000472385_01693	Unannotated protein. (1029 aa)
	GCA_000472385_01350	Unannotated protein. (959 aa)
	GCA_000472385_01317	Unannotated protein. (659 aa)
	GCA_000472385_01190	Unannotated protein. (341 aa)
	GCA_000472385_01124	Unannotated protein. (465 aa)
	GCA_000472385_01123	Unannotated protein. (340 aa)
	GCA_000472385_01122	Unannotated protein. (505 aa)
	GCA_000472385_01071	Unannotated protein. (326 aa)
	GCA_000472385_01070	Unannotated protein. (366 aa)
	GCA_000472385_06476	Unannotated protein. (148 aa)
	GCA_000472385_06023	Unannotated protein. (218 aa)
	GCA_000472385_05962	Unannotated protein. (479 aa)
	GCA_000472385_05886	Unannotated protein. (788 aa)
	GCA_000472385_05885	Unannotated protein. (476 aa)
	GCA_000472385_05865	Unannotated protein. (430 aa)
	GCA_000472385_00766	Unannotated protein. (336 aa)
	GCA_000472385_00721	Unannotated protein. (482 aa)
	GCA_000472385_00645	Unannotated protein. (764 aa)
	GCA_000472385_00595	Unannotated protein. (352 aa)

Your Current Organism:

Bradyrhizobium sp. ARR65

NCBI taxonomy Id: 1040989
Other names: B. sp. ARR65

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000472385_00135	GCA_000472385_00562	Unannotated protein.	Unannotated protein.	0.654
GCA_000472385_00135	GCA_000472385_01124	Unannotated protein.	Unannotated protein.	0.672
GCA_000472385_00135	GCA_000472385_01693	Unannotated protein.	Unannotated protein.	0.720
GCA_000472385_00135	GCA_000472385_07223	Unannotated protein.	Unannotated protein.	0.633
GCA_000472385_00508	GCA_000472385_00562	Unannotated protein.	Unannotated protein.	0.439
GCA_000472385_00508	GCA_000472385_01071	Unannotated protein.	Unannotated protein.	0.516
GCA_000472385_00508	GCA_000472385_01124	Unannotated protein.	Unannotated protein.	0.771
GCA_000472385_00508	GCA_000472385_01190	Unannotated protein.	Unannotated protein.	0.600
GCA_000472385_00508	GCA_000472385_05625	Unannotated protein.	Unannotated protein.	0.600
GCA_000472385_00508	GCA_000472385_05886	Unannotated protein.	Unannotated protein.	0.481
GCA_000472385_00525	GCA_000472385_00562	Unannotated protein.	Unannotated protein.	0.783
GCA_000472385_00525	GCA_000472385_00645	Unannotated protein.	Unannotated protein.	0.868
GCA_000472385_00525	GCA_000472385_01317	Unannotated protein.	Unannotated protein.	0.441
GCA_000472385_00525	GCA_000472385_01350	Unannotated protein.	Unannotated protein.	0.891
GCA_000472385_00525	GCA_000472385_02895	Unannotated protein.	Unannotated protein.	0.915
GCA_000472385_00525	GCA_000472385_02897	Unannotated protein.	Unannotated protein.	0.995
GCA_000472385_00525	GCA_000472385_05703	Unannotated protein.	Unannotated protein.	0.868
GCA_000472385_00562	GCA_000472385_00135	Unannotated protein.	Unannotated protein.	0.654
GCA_000472385_00562	GCA_000472385_00508	Unannotated protein.	Unannotated protein.	0.439
GCA_000472385_00562	GCA_000472385_00525	Unannotated protein.	Unannotated protein.	0.783