(46 nodes) Citrate cycle (TCA cycle) network (Bradyrhizobium sp. ARR65)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000472385_00496	Unannotated protein. (311 aa)
	GCA_000472385_00561	Unannotated protein. (351 aa)
	GCA_000472385_00562	Unannotated protein. (615 aa)
	GCA_000472385_00589	Unannotated protein. (464 aa)
	GCA_000472385_00636	Unannotated protein. (479 aa)
	GCA_000472385_00638	Unannotated protein. (509 aa)
	GCA_000472385_00715	Unannotated protein. (180 aa)
	GCA_000472385_00827	Unannotated protein. (472 aa)
	GCA_000472385_01067	Unannotated protein. (435 aa)
	GCA_000472385_01070	Unannotated protein. (366 aa)
	GCA_000472385_01072	Unannotated protein. (366 aa)
	GCA_000472385_01123	Unannotated protein. (340 aa)
	GCA_000472385_01124	Unannotated protein. (465 aa)
	GCA_000472385_01127	Unannotated protein. (454 aa)
	GCA_000472385_01128	Unannotated protein. (473 aa)
	GCA_000472385_01317	Unannotated protein. (659 aa)
	GCA_000472385_01957	Unannotated protein. (94 aa)
	GCA_000472385_02134	Unannotated protein. (241 aa)
	GCA_000472385_02155	Unannotated protein. (484 aa)
	GCA_000472385_03115	Unannotated protein. (564 aa)
	GCA_000472385_03139	Unannotated protein. (443 aa)
	GCA_000472385_03448	Unannotated protein. (132 aa)
	GCA_000472385_03597	Unannotated protein. (538 aa)
	GCA_000472385_04130	Unannotated protein. (73 aa)
	GCA_000472385_05162	Unannotated protein. (533 aa)
	GCA_000472385_05239	Unannotated protein. (289 aa)
	GCA_000472385_05275	Unannotated protein. (473 aa)
	GCA_000472385_05610	Unannotated protein. (260 aa)
	GCA_000472385_05611	Unannotated protein. (614 aa)
	GCA_000472385_05612	Unannotated protein. (139 aa)
	GCA_000472385_05613	Unannotated protein. (132 aa)
	GCA_000472385_05828	Unannotated protein. (906 aa)
	GCA_000472385_05838	Unannotated protein. (322 aa)
	GCA_000472385_05839	Unannotated protein. (398 aa)
	GCA_000472385_05841	Unannotated protein. (294 aa)
	GCA_000472385_05842	Unannotated protein. (985 aa)
	GCA_000472385_05843	Unannotated protein. (419 aa)
	GCA_000472385_05845	Unannotated protein. (466 aa)
	GCA_000472385_05886	Unannotated protein. (788 aa)
	GCA_000472385_07165	Unannotated protein. (405 aa)
	GCA_000472385_07282	Unannotated protein. (551 aa)
	GCA_000472385_07400	Unannotated protein. (258 aa)
	GCA_000472385_07502	Unannotated protein. (276 aa)
	GCA_000472385_07568	Unannotated protein. (580 aa)
	GCA_000472385_07595	Unannotated protein. (505 aa)
	GCA_000472385_07839	Unannotated protein. (96 aa)

Your Current Organism:

Bradyrhizobium sp. ARR65

NCBI taxonomy Id: 1040989
Other names: B. sp. ARR65

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000472385_00496	GCA_000472385_00561	Unannotated protein.	Unannotated protein.	0.774
GCA_000472385_00496	GCA_000472385_00562	Unannotated protein.	Unannotated protein.	0.915
GCA_000472385_00496	GCA_000472385_00589	Unannotated protein.	Unannotated protein.	0.678
GCA_000472385_00496	GCA_000472385_00636	Unannotated protein.	Unannotated protein.	0.678
GCA_000472385_00496	GCA_000472385_00638	Unannotated protein.	Unannotated protein.	0.463
GCA_000472385_00496	GCA_000472385_00827	Unannotated protein.	Unannotated protein.	0.678
GCA_000472385_00496	GCA_000472385_01067	Unannotated protein.	Unannotated protein.	0.929
GCA_000472385_00496	GCA_000472385_01070	Unannotated protein.	Unannotated protein.	0.453
GCA_000472385_00496	GCA_000472385_01072	Unannotated protein.	Unannotated protein.	0.554
GCA_000472385_00496	GCA_000472385_01123	Unannotated protein.	Unannotated protein.	0.453
GCA_000472385_00496	GCA_000472385_01124	Unannotated protein.	Unannotated protein.	0.860
GCA_000472385_00496	GCA_000472385_01127	Unannotated protein.	Unannotated protein.	0.554
GCA_000472385_00496	GCA_000472385_01128	Unannotated protein.	Unannotated protein.	0.401
GCA_000472385_00496	GCA_000472385_01317	Unannotated protein.	Unannotated protein.	0.682
GCA_000472385_00496	GCA_000472385_01957	Unannotated protein.	Unannotated protein.	0.929
GCA_000472385_00496	GCA_000472385_02155	Unannotated protein.	Unannotated protein.	0.678
GCA_000472385_00496	GCA_000472385_03115	Unannotated protein.	Unannotated protein.	0.661
GCA_000472385_00496	GCA_000472385_03139	Unannotated protein.	Unannotated protein.	0.661
GCA_000472385_00496	GCA_000472385_03448	Unannotated protein.	Unannotated protein.	0.798
GCA_000472385_00496	GCA_000472385_03597	Unannotated protein.	Unannotated protein.	0.557