(48 nodes) Alanine, aspartate and glutamate metabolism network (Bradyrhizobium sp. ARR65)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000472385_07904	Unannotated protein. (555 aa)
	GCA_000472385_00074	Unannotated protein. (463 aa)
	GCA_000472385_00317	Unannotated protein. (400 aa)
	GCA_000472385_00340	Unannotated protein. (430 aa)
	GCA_000472385_00936	Unannotated protein. (469 aa)
	GCA_000472385_01075	Unannotated protein. (476 aa)
	GCA_000472385_01227	Unannotated protein. (435 aa)
	GCA_000472385_01404	Unannotated protein. (244 aa)
	GCA_000472385_01617	Unannotated protein. (1154 aa)
	GCA_000472385_01622	Unannotated protein. (396 aa)
	GCA_000472385_01693	Unannotated protein. (1029 aa)
	GCA_000472385_01949	Unannotated protein. (331 aa)
	GCA_000472385_02433	Unannotated protein. (533 aa)
	GCA_000472385_02741	Unannotated protein. (552 aa)
	GCA_000472385_02815	Unannotated protein. (469 aa)
	GCA_000472385_03433	Unannotated protein. (478 aa)
	GCA_000472385_03926	Unannotated protein. (497 aa)
	GCA_000472385_04109	Unannotated protein. (397 aa)
	GCA_000472385_04233	Unannotated protein. (506 aa)
	GCA_000472385_08080	Unannotated protein. (525 aa)
	GCA_000472385_04289	Unannotated protein. (396 aa)
	GCA_000472385_04312	Unannotated protein. (396 aa)
	GCA_000472385_04348	Unannotated protein. (402 aa)
	GCA_000472385_04589	Unannotated protein. (344 aa)
	GCA_000472385_04655	Unannotated protein. (149 aa)
	GCA_000472385_04973	Unannotated protein. (1577 aa)
	GCA_000472385_04974	Unannotated protein. (484 aa)
	GCA_000472385_05087	Unannotated protein. (183 aa)
	GCA_000472385_05156	Unannotated protein. (340 aa)
	GCA_000472385_05604	Unannotated protein. (445 aa)
	GCA_000472385_05648	Unannotated protein. (425 aa)
	GCA_000472385_05962	Unannotated protein. (479 aa)
	GCA_000472385_05965	Unannotated protein. (157 aa)
	GCA_000472385_05966	Unannotated protein. (148 aa)
	GCA_000472385_06023	Unannotated protein. (218 aa)
	GCA_000472385_06218	Unannotated protein. (395 aa)
	GCA_000472385_06476	Unannotated protein. (148 aa)
	GCA_000472385_06808	Unannotated protein. (400 aa)
	GCA_000472385_06810	Unannotated protein. (399 aa)
	GCA_000472385_06817	Unannotated protein. (623 aa)
	GCA_000472385_06914	Unannotated protein. (317 aa)
	GCA_000472385_07042	Unannotated protein. (644 aa)
	GCA_000472385_07057	Unannotated protein. (410 aa)
	GCA_000472385_07350	Unannotated protein. (217 aa)
	GCA_000472385_07382	Unannotated protein. (233 aa)
	GCA_000472385_07409	Unannotated protein. (370 aa)
	GCA_000472385_07836	Unannotated protein. (53 aa)
	GCA_000472385_07888	Unannotated protein. (96 aa)

Your Current Organism:

Bradyrhizobium sp. ARR65

NCBI taxonomy Id: 1040989
Other names: B. sp. ARR65

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000472385_00074	GCA_000472385_00317	Unannotated protein.	Unannotated protein.	0.510
GCA_000472385_00074	GCA_000472385_00340	Unannotated protein.	Unannotated protein.	0.630
GCA_000472385_00074	GCA_000472385_01227	Unannotated protein.	Unannotated protein.	0.902
GCA_000472385_00074	GCA_000472385_01617	Unannotated protein.	Unannotated protein.	0.930
GCA_000472385_00074	GCA_000472385_01622	Unannotated protein.	Unannotated protein.	0.822
GCA_000472385_00074	GCA_000472385_01693	Unannotated protein.	Unannotated protein.	0.405
GCA_000472385_00074	GCA_000472385_01949	Unannotated protein.	Unannotated protein.	0.576
GCA_000472385_00074	GCA_000472385_02433	Unannotated protein.	Unannotated protein.	0.616
GCA_000472385_00074	GCA_000472385_02815	Unannotated protein.	Unannotated protein.	0.883
GCA_000472385_00074	GCA_000472385_04109	Unannotated protein.	Unannotated protein.	0.510
GCA_000472385_00074	GCA_000472385_04289	Unannotated protein.	Unannotated protein.	0.449
GCA_000472385_00074	GCA_000472385_04312	Unannotated protein.	Unannotated protein.	0.510
GCA_000472385_00074	GCA_000472385_04348	Unannotated protein.	Unannotated protein.	0.510
GCA_000472385_00074	GCA_000472385_04973	Unannotated protein.	Unannotated protein.	0.597
GCA_000472385_00074	GCA_000472385_05604	Unannotated protein.	Unannotated protein.	0.998
GCA_000472385_00074	GCA_000472385_05648	Unannotated protein.	Unannotated protein.	0.528
GCA_000472385_00317	GCA_000472385_00074	Unannotated protein.	Unannotated protein.	0.510
GCA_000472385_00317	GCA_000472385_00340	Unannotated protein.	Unannotated protein.	0.891
GCA_000472385_00317	GCA_000472385_00936	Unannotated protein.	Unannotated protein.	0.419
GCA_000472385_00317	GCA_000472385_01693	Unannotated protein.	Unannotated protein.	0.902