(118 nodes) Glyoxylate and dicarboxylate metabolism network (Bradyrhizobium sp. ARR65)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000472385_00936	Unannotated protein. (469 aa)
	GCA_000472385_00873	Unannotated protein. (436 aa)
	GCA_000472385_00868	Unannotated protein. (185 aa)
	GCA_000472385_00787	Unannotated protein. (427 aa)
	GCA_000472385_00695	Unannotated protein. (224 aa)
	GCA_000472385_00645	Unannotated protein. (764 aa)
	GCA_000472385_00644	Unannotated protein. (399 aa)
	GCA_000472385_00629	Unannotated protein. (351 aa)
	GCA_000472385_00615	Unannotated protein. (284 aa)
	GCA_000472385_00525	Unannotated protein. (921 aa)
	GCA_000472385_00524	Unannotated protein. (567 aa)
	GCA_000472385_00496	Unannotated protein. (311 aa)
	GCA_000472385_00431	Unannotated protein. (136 aa)
	GCA_000472385_00430	Unannotated protein. (486 aa)
	GCA_000472385_00169	Unannotated protein. (152 aa)
	GCA_000472385_00086	Unannotated protein. (357 aa)
	GCA_000472385_00081	Unannotated protein. (164 aa)
	GCA_000472385_02136	Unannotated protein. (490 aa)
	GCA_000472385_03252	Unannotated protein. (286 aa)
	GCA_000472385_03254	Unannotated protein. (382 aa)
	GCA_000472385_03269	Unannotated protein. (510 aa)
	GCA_000472385_03284	Unannotated protein. (314 aa)
	GCA_000472385_03337	Unannotated protein. (316 aa)
	GCA_000472385_03433	Unannotated protein. (478 aa)
	GCA_000472385_03657	Unannotated protein. (328 aa)
	GCA_000472385_03687	Unannotated protein. (537 aa)
	GCA_000472385_03722	Unannotated protein. (487 aa)
	GCA_000472385_03792	Unannotated protein. (392 aa)
	GCA_000472385_03793	Unannotated protein. (241 aa)
	GCA_000472385_03887	Unannotated protein. (333 aa)
	GCA_000472385_04127	Unannotated protein. (378 aa)
	GCA_000472385_04134	Unannotated protein. (398 aa)
	GCA_000472385_04143	Unannotated protein. (577 aa)
	GCA_000472385_04144	Unannotated protein. (159 aa)
	GCA_000472385_04196	Unannotated protein. (118 aa)
	GCA_000472385_04455	Unannotated protein. (402 aa)
	GCA_000472385_04589	Unannotated protein. (344 aa)
	GCA_000472385_04736	Unannotated protein. (213 aa)
	GCA_000472385_04863	Unannotated protein. (339 aa)
	GCA_000472385_04884	Unannotated protein. (438 aa)
	GCA_000472385_04885	Unannotated protein. (411 aa)
	GCA_000472385_04889	Unannotated protein. (497 aa)
	GCA_000472385_04962	Unannotated protein. (295 aa)
	GCA_000472385_05105	Unannotated protein. (231 aa)
	GCA_000472385_05189	Unannotated protein. (395 aa)
	GCA_000472385_05200	Unannotated protein. (427 aa)
	GCA_000472385_05251	Unannotated protein. (390 aa)
	GCA_000472385_05284	Unannotated protein. (389 aa)
	GCA_000472385_05285	Unannotated protein. (216 aa)
	GCA_000472385_05318	Unannotated protein. (295 aa)
	GCA_000472385_05319	Unannotated protein. (261 aa)
	GCA_000472385_05320	Unannotated protein. (595 aa)
	GCA_000472385_05387	Unannotated protein. (460 aa)
	GCA_000472385_05521	Unannotated protein. (137 aa)
	GCA_000472385_05554	Unannotated protein. (649 aa)
	GCA_000472385_05703	Unannotated protein. (769 aa)
	GCA_000472385_05707	Unannotated protein. (211 aa)
	GCA_000472385_05708	Unannotated protein. (62 aa)
	GCA_000472385_05828	Unannotated protein. (906 aa)
	GCA_000472385_05838	Unannotated protein. (322 aa)
	GCA_000472385_05845	Unannotated protein. (466 aa)
	GCA_000472385_05868	Unannotated protein. (159 aa)
	GCA_000472385_05961	Unannotated protein. (436 aa)
	GCA_000472385_06082	Unannotated protein. (150 aa)
	GCA_000472385_06151	Unannotated protein. (460 aa)
	GCA_000472385_06218	Unannotated protein. (395 aa)
	GCA_000472385_06317	Unannotated protein. (108 aa)
	GCA_000472385_06659	Unannotated protein. (283 aa)
	GCA_000472385_06661	Unannotated protein. (359 aa)
	GCA_000472385_06721	Unannotated protein. (137 aa)
	GCA_000472385_06808	Unannotated protein. (400 aa)
	GCA_000472385_06810	Unannotated protein. (399 aa)
	GCA_000472385_07159	Unannotated protein. (962 aa)
	GCA_000472385_07160	Unannotated protein. (121 aa)
	GCA_000472385_07161	Unannotated protein. (381 aa)
	GCA_000472385_07416	Unannotated protein. (286 aa)
	GCA_000472385_07487	Unannotated protein. (331 aa)
	GCA_000472385_07591	Unannotated protein. (487 aa)
	GCA_000472385_07608	Unannotated protein. (488 aa)
	GCA_000472385_07695	Unannotated protein. (450 aa)
	GCA_000472385_07935	Unannotated protein. (287 aa)
	GCA_000472385_07952	Unannotated protein. (265 aa)
	GCA_000472385_08081	Unannotated protein. (226 aa)
	GCA_000472385_02151	Unannotated protein. (247 aa)
	GCA_000472385_02249	Unannotated protein. (229 aa)
	GCA_000472385_02251	Unannotated protein. (258 aa)
	GCA_000472385_02279	Unannotated protein. (271 aa)
	GCA_000472385_02502	Unannotated protein. (435 aa)
	GCA_000472385_02570	Unannotated protein. (590 aa)
	GCA_000472385_02721	Unannotated protein. (489 aa)
	GCA_000472385_02816	Unannotated protein. (670 aa)
	GCA_000472385_02858	Unannotated protein. (990 aa)
	GCA_000472385_02895	Unannotated protein. (981 aa)
	GCA_000472385_02896	Unannotated protein. (198 aa)
	GCA_000472385_02897	Unannotated protein. (336 aa)
	GCA_000472385_02961	Unannotated protein. (260 aa)
	GCA_000472385_02966	Unannotated protein. (504 aa)
	GCA_000472385_02986	Unannotated protein. (379 aa)
	GCA_000472385_03085	Unannotated protein. (717 aa)
	GCA_000472385_03087	Unannotated protein. (620 aa)
	GCA_000472385_02134	Unannotated protein. (241 aa)
	GCA_000472385_02029	Unannotated protein. (399 aa)
	GCA_000472385_01957	Unannotated protein. (94 aa)
	GCA_000472385_01883	Unannotated protein. (192 aa)
	GCA_000472385_01873	Unannotated protein. (720 aa)
	GCA_000472385_01625	Unannotated protein. (535 aa)
	GCA_000472385_01500	Unannotated protein. (321 aa)
	GCA_000472385_01376	Unannotated protein. (576 aa)
	GCA_000472385_01352	Unannotated protein. (198 aa)
	GCA_000472385_01351	Unannotated protein. (518 aa)
	GCA_000472385_01350	Unannotated protein. (959 aa)
	GCA_000472385_01348	Unannotated protein. (70 aa)
	GCA_000472385_01172	Unannotated protein. (222 aa)
	GCA_000472385_01128	Unannotated protein. (473 aa)
	GCA_000472385_01096	Unannotated protein. (378 aa)
	GCA_000472385_01075	Unannotated protein. (476 aa)
	GCA_000472385_01067	Unannotated protein. (435 aa)
	GCA_000472385_01028	Unannotated protein. (134 aa)

Your Current Organism:

Bradyrhizobium sp. ARR65

NCBI taxonomy Id: 1040989
Other names: B. sp. ARR65

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000472385_00086	GCA_000472385_00524	Unannotated protein.	Unannotated protein.	0.664
GCA_000472385_00086	GCA_000472385_01067	Unannotated protein.	Unannotated protein.	0.572
GCA_000472385_00086	GCA_000472385_01128	Unannotated protein.	Unannotated protein.	0.857
GCA_000472385_00086	GCA_000472385_01351	Unannotated protein.	Unannotated protein.	0.481
GCA_000472385_00086	GCA_000472385_01376	Unannotated protein.	Unannotated protein.	0.401
GCA_000472385_00086	GCA_000472385_01957	Unannotated protein.	Unannotated protein.	0.572
GCA_000472385_00086	GCA_000472385_05828	Unannotated protein.	Unannotated protein.	0.675
GCA_000472385_00086	GCA_000472385_05845	Unannotated protein.	Unannotated protein.	0.857
GCA_000472385_00086	GCA_000472385_06661	Unannotated protein.	Unannotated protein.	0.886
GCA_000472385_00086	GCA_000472385_07159	Unannotated protein.	Unannotated protein.	0.418
GCA_000472385_00169	GCA_000472385_00629	Unannotated protein.	Unannotated protein.	0.587
GCA_000472385_00169	GCA_000472385_00787	Unannotated protein.	Unannotated protein.	0.465
GCA_000472385_00169	GCA_000472385_01067	Unannotated protein.	Unannotated protein.	0.485
GCA_000472385_00169	GCA_000472385_01873	Unannotated protein.	Unannotated protein.	0.633
GCA_000472385_00169	GCA_000472385_01957	Unannotated protein.	Unannotated protein.	0.485
GCA_000472385_00169	GCA_000472385_02136	Unannotated protein.	Unannotated protein.	0.587
GCA_000472385_00169	GCA_000472385_02966	Unannotated protein.	Unannotated protein.	0.521
GCA_000472385_00169	GCA_000472385_02986	Unannotated protein.	Unannotated protein.	0.557
GCA_000472385_00169	GCA_000472385_03254	Unannotated protein.	Unannotated protein.	0.465
GCA_000472385_00169	GCA_000472385_03722	Unannotated protein.	Unannotated protein.	0.587