(29 nodes) Carbon fixation in photosynthetic organisms network (Bradyrhizobium sp. ARR65)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000472385_05780	Unannotated protein. (538 aa)
	GCA_000472385_00426	Unannotated protein. (374 aa)
	GCA_000472385_00427	Unannotated protein. (291 aa)
	GCA_000472385_00428	Unannotated protein. (674 aa)
	GCA_000472385_00429	Unannotated protein. (361 aa)
	GCA_000472385_00430	Unannotated protein. (486 aa)
	GCA_000472385_00431	Unannotated protein. (136 aa)
	GCA_000472385_00433	Unannotated protein. (235 aa)
	GCA_000472385_00508	Unannotated protein. (335 aa)
	GCA_000472385_01106	Unannotated protein. (252 aa)
	GCA_000472385_01237	Unannotated protein. (243 aa)
	GCA_000472385_01926	Unannotated protein. (342 aa)
	GCA_000472385_01927	Unannotated protein. (355 aa)
	GCA_000472385_01928	Unannotated protein. (397 aa)
	GCA_000472385_01929	Unannotated protein. (335 aa)
	GCA_000472385_05838	Unannotated protein. (322 aa)
	GCA_000472385_01930	Unannotated protein. (660 aa)
	GCA_000472385_02148	Unannotated protein. (551 aa)
	GCA_000472385_02154	Unannotated protein. (550 aa)
	GCA_000472385_02344	Unannotated protein. (688 aa)
	GCA_000472385_02436	Unannotated protein. (969 aa)
	GCA_000472385_02456	Unannotated protein. (816 aa)
	GCA_000472385_02982	Unannotated protein. (931 aa)
	GCA_000472385_03597	Unannotated protein. (538 aa)
	GCA_000472385_04054	Unannotated protein. (333 aa)
	GCA_000472385_04618	Unannotated protein. (769 aa)
	GCA_000472385_05066	Unannotated protein. (336 aa)
	GCA_000472385_05067	Unannotated protein. (279 aa)
	GCA_000472385_05106	Unannotated protein. (230 aa)

Your Current Organism:

Bradyrhizobium sp. ARR65

NCBI taxonomy Id: 1040989
Other names: B. sp. ARR65

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000472385_00426	GCA_000472385_00427	Unannotated protein.	Unannotated protein.	0.900
GCA_000472385_00426	GCA_000472385_00428	Unannotated protein.	Unannotated protein.	0.989
GCA_000472385_00426	GCA_000472385_00429	Unannotated protein.	Unannotated protein.	0.987
GCA_000472385_00426	GCA_000472385_00430	Unannotated protein.	Unannotated protein.	0.869
GCA_000472385_00426	GCA_000472385_00431	Unannotated protein.	Unannotated protein.	0.785
GCA_000472385_00426	GCA_000472385_00433	Unannotated protein.	Unannotated protein.	0.721
GCA_000472385_00426	GCA_000472385_00508	Unannotated protein.	Unannotated protein.	0.616
GCA_000472385_00426	GCA_000472385_01106	Unannotated protein.	Unannotated protein.	0.574
GCA_000472385_00426	GCA_000472385_01237	Unannotated protein.	Unannotated protein.	0.745
GCA_000472385_00426	GCA_000472385_01926	Unannotated protein.	Unannotated protein.	0.969
GCA_000472385_00426	GCA_000472385_01927	Unannotated protein.	Unannotated protein.	0.974
GCA_000472385_00426	GCA_000472385_01928	Unannotated protein.	Unannotated protein.	0.491
GCA_000472385_00426	GCA_000472385_01929	Unannotated protein.	Unannotated protein.	0.616
GCA_000472385_00426	GCA_000472385_01930	Unannotated protein.	Unannotated protein.	0.975
GCA_000472385_00426	GCA_000472385_02344	Unannotated protein.	Unannotated protein.	0.887
GCA_000472385_00426	GCA_000472385_02436	Unannotated protein.	Unannotated protein.	0.491
GCA_000472385_00426	GCA_000472385_02456	Unannotated protein.	Unannotated protein.	0.892
GCA_000472385_00426	GCA_000472385_03597	Unannotated protein.	Unannotated protein.	0.520
GCA_000472385_00426	GCA_000472385_04054	Unannotated protein.	Unannotated protein.	0.908
GCA_000472385_00426	GCA_000472385_04618	Unannotated protein.	Unannotated protein.	0.432