32 items (Trichoderma asperellum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2T3ZQI3	Uncharacterized protein. (312 aa)
	A0A2T3YS86	WD_REPEATS_REGION domain-containing protein. (906 aa)
	A0A2T3YSA4	Uncharacterized protein. (306 aa)
	A0A2T3YWA7	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (742 aa)
	A0A2T3YWA8	RING-type domain-containing protein. (663 aa)
	A0A2T3YXK4	Utp12 domain-containing protein. (407 aa)
	A0A2T3YXR0	RRM domain-containing protein. (285 aa)
	A0A2T3YZ39	Uncharacterized protein. (773 aa)
	A0A2T3Z2M6	Brix domain-containing protein. (297 aa)
	A0A2T3Z4E8	Uncharacterized protein. (405 aa)
	A0A2T3Z4L2	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family. (145 aa)
	A0A2T3Z4N3	CBF domain-containing protein. (993 aa)
	A0A2T3Z663	Zn(2)-C6 fungal-type domain-containing protein. (725 aa)
	NAT10	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1067 aa)
	A0A2T3Z714	Uncharacterized protein. (715 aa)
	A0A2T3Z7Z8	S4 RNA-binding domain-containing protein. (183 aa)
	A0A2T3ZCP2	RNA helicase. (468 aa)
	A0A2T3ZEB5	Uncharacterized protein; Belongs to the DEAD box helicase family. (541 aa)
	A0A2T3ZH40	WD_REPEATS_REGION domain-containing protein. (659 aa)
	A0A2T3ZHK3	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (342 aa)
	A0A2T3ZHM2	Zn(2)-C6 fungal-type domain-containing protein. (771 aa)
	A0A2T3ZHR9	Uncharacterized protein. (549 aa)
	A0A2T3ZI46	Uncharacterized protein. (397 aa)
	A0A2T3ZK46	RRM domain-containing protein. (325 aa)
	A0A2T3ZK74	Uncharacterized protein. (246 aa)
	A0A2T3ZKS6	Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family. (507 aa)
	A0A2T3ZNC8	RNA helicase. (626 aa)
	A0A2T3ZPI9	WD_REPEATS_REGION domain-containing protein. (962 aa)
	A0A2T3ZPJ7	CBF domain-containing protein. (553 aa)
	A0A2T3ZPQ6	F-box domain-containing protein. (1166 aa)
	A0A2T3ZPY1	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (313 aa)
	A0A2T3ZPY8	Uncharacterized protein. (913 aa)

Your Current Organism:

Trichoderma asperellum

NCBI taxonomy Id: 1042311
Other names: T. asperellum CBS 433.97, Trichoderma asperellum CBS 433.97

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A2T3YS86	A0A2T3YSA4	A0A2T3YS86	A0A2T3YSA4	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.738
A0A2T3YS86	A0A2T3YWA7	A0A2T3YS86	A0A2T3YWA7	WD_REPEATS_REGION domain-containing protein.	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.	0.997
A0A2T3YS86	A0A2T3YXK4	A0A2T3YS86	A0A2T3YXK4	WD_REPEATS_REGION domain-containing protein.	Utp12 domain-containing protein.	0.999
A0A2T3YS86	A0A2T3YXR0	A0A2T3YS86	A0A2T3YXR0	WD_REPEATS_REGION domain-containing protein.	RRM domain-containing protein.	0.615
A0A2T3YS86	A0A2T3YZ39	A0A2T3YS86	A0A2T3YZ39	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.922
A0A2T3YS86	A0A2T3Z2M6	A0A2T3YS86	A0A2T3Z2M6	WD_REPEATS_REGION domain-containing protein.	Brix domain-containing protein.	0.997
A0A2T3YS86	A0A2T3Z4E8	A0A2T3YS86	A0A2T3Z4E8	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.997
A0A2T3YS86	A0A2T3Z4L2	A0A2T3YS86	A0A2T3Z4L2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	0.974
A0A2T3YS86	A0A2T3Z4N3	A0A2T3YS86	A0A2T3Z4N3	WD_REPEATS_REGION domain-containing protein.	CBF domain-containing protein.	0.915
A0A2T3YS86	A0A2T3Z714	A0A2T3YS86	A0A2T3Z714	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.890
A0A2T3YS86	A0A2T3Z7Z8	A0A2T3YS86	A0A2T3Z7Z8	WD_REPEATS_REGION domain-containing protein.	S4 RNA-binding domain-containing protein.	0.996
A0A2T3YS86	A0A2T3ZCP2	A0A2T3YS86	A0A2T3ZCP2	WD_REPEATS_REGION domain-containing protein.	RNA helicase.	0.993
A0A2T3YS86	A0A2T3ZEB5	A0A2T3YS86	A0A2T3ZEB5	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.802
A0A2T3YS86	A0A2T3ZH40	A0A2T3YS86	A0A2T3ZH40	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.997
A0A2T3YS86	A0A2T3ZHR9	A0A2T3YS86	A0A2T3ZHR9	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.992
A0A2T3YS86	A0A2T3ZI46	A0A2T3YS86	A0A2T3ZI46	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.999
A0A2T3YS86	A0A2T3ZK46	A0A2T3YS86	A0A2T3ZK46	WD_REPEATS_REGION domain-containing protein.	RRM domain-containing protein.	0.655
A0A2T3YS86	A0A2T3ZK74	A0A2T3YS86	A0A2T3ZK74	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.480
A0A2T3YS86	A0A2T3ZKS6	A0A2T3YS86	A0A2T3ZKS6	WD_REPEATS_REGION domain-containing protein.	Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family.	0.677
A0A2T3YS86	A0A2T3ZNC8	A0A2T3YS86	A0A2T3ZNC8	WD_REPEATS_REGION domain-containing protein.	RNA helicase.	0.766