19 items (Trichoderma asperellum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2T3YS92	Carbohydrate-binding module family 48 protein. (467 aa)
	A0A2T3ZPN7	Copper radical oxidase. (1118 aa)
	A0A2T3ZN17	J domain-containing protein. (700 aa)
	A0A2T3ZLW6	ML domain-containing protein. (181 aa)
	A0A2T3ZLM0	Uncharacterized protein. (1981 aa)
	A0A2T3ZH43	Arrestin_C domain-containing protein. (599 aa)
	A0A2T3ZFL9	Uncharacterized protein. (283 aa)
	A0A2T3ZEH8	Uncharacterized protein. (1539 aa)
	A0A2T3Z8S2	Glycoside hydrolase family 13 protein. (710 aa)
	A0A2T3Z5F5	ANK_REP_REGION domain-containing protein. (1447 aa)
	A0A2T3Z544	Arrestin_C domain-containing protein. (404 aa)
	A0A2T3Z4A8	Arrestin_C domain-containing protein. (877 aa)
	A0A2T3Z319	Uncharacterized protein. (199 aa)
	A0A2T3Z1W6	Uncharacterized protein. (568 aa)
	A0A2T3YYS8	Cytochrome b5 heme-binding domain-containing protein. (665 aa)
	A0A2T3YWQ7	Uncharacterized protein. (2202 aa)
	A0A2T3YW99	Carbohydrate-binding module family 48 protein. (606 aa)
	A0A2T3YSE7	Uncharacterized protein. (1021 aa)
	A0A2T3YRA2	Uncharacterized protein. (977 aa)

Your Current Organism:

Trichoderma asperellum

NCBI taxonomy Id: 1042311
Other names: T. asperellum CBS 433.97, Trichoderma asperellum CBS 433.97

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2T3YRA2	A0A2T3YSE7	Uncharacterized protein.	Uncharacterized protein.	0.984
A0A2T3YRA2	A0A2T3YYS8	Uncharacterized protein.	Cytochrome b5 heme-binding domain-containing protein.	0.956
A0A2T3YRA2	A0A2T3Z1W6	Uncharacterized protein.	Uncharacterized protein.	0.956
A0A2T3YRA2	A0A2T3Z5F5	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.448
A0A2T3YSE7	A0A2T3YRA2	Uncharacterized protein.	Uncharacterized protein.	0.984
A0A2T3YSE7	A0A2T3YYS8	Uncharacterized protein.	Cytochrome b5 heme-binding domain-containing protein.	0.956
A0A2T3YSE7	A0A2T3Z1W6	Uncharacterized protein.	Uncharacterized protein.	0.956
A0A2T3YSE7	A0A2T3Z5F5	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.448
A0A2T3YWQ7	A0A2T3ZEH8	Uncharacterized protein.	Uncharacterized protein.	0.623
A0A2T3YWQ7	A0A2T3ZFL9	Uncharacterized protein.	Uncharacterized protein.	0.937
A0A2T3YWQ7	A0A2T3ZN17	Uncharacterized protein.	J domain-containing protein.	0.845
A0A2T3YYS8	A0A2T3YRA2	Cytochrome b5 heme-binding domain-containing protein.	Uncharacterized protein.	0.956
A0A2T3YYS8	A0A2T3YSE7	Cytochrome b5 heme-binding domain-containing protein.	Uncharacterized protein.	0.956
A0A2T3Z1W6	A0A2T3YRA2	Uncharacterized protein.	Uncharacterized protein.	0.956
A0A2T3Z1W6	A0A2T3YSE7	Uncharacterized protein.	Uncharacterized protein.	0.956
A0A2T3Z5F5	A0A2T3YRA2	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.448
A0A2T3Z5F5	A0A2T3YSE7	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.448
A0A2T3ZEH8	A0A2T3YWQ7	Uncharacterized protein.	Uncharacterized protein.	0.623
A0A2T3ZEH8	A0A2T3ZFL9	Uncharacterized protein.	Uncharacterized protein.	0.609
A0A2T3ZEH8	A0A2T3ZLM0	Uncharacterized protein.	Uncharacterized protein.	0.621