6 items (Trichoderma asperellum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2T3Z5U5	Uncharacterized protein. (343 aa)
	A0A2T3YXQ3	Uncharacterized protein. (195 aa)
	A0A2T3YW86	Uncharacterized protein. (187 aa)
	A0A2T3YT28	Uncharacterized protein. (210 aa)
	A0A2T3ZFL0	Uncharacterized protein. (200 aa)
	A0A2T3ZF83	Uncharacterized protein. (268 aa)

Your Current Organism:

Trichoderma asperellum

NCBI taxonomy Id: 1042311
Other names: T. asperellum CBS 433.97, Trichoderma asperellum CBS 433.97

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2T3YT28	A0A2T3YXQ3	Uncharacterized protein.	Uncharacterized protein.	0.722
A0A2T3YT28	A0A2T3ZF83	Uncharacterized protein.	Uncharacterized protein.	0.806
A0A2T3YT28	A0A2T3ZFL0	Uncharacterized protein.	Uncharacterized protein.	0.502
A0A2T3YW86	A0A2T3YXQ3	Uncharacterized protein.	Uncharacterized protein.	0.816
A0A2T3YW86	A0A2T3ZF83	Uncharacterized protein.	Uncharacterized protein.	0.834
A0A2T3YXQ3	A0A2T3YT28	Uncharacterized protein.	Uncharacterized protein.	0.722
A0A2T3YXQ3	A0A2T3YW86	Uncharacterized protein.	Uncharacterized protein.	0.816
A0A2T3YXQ3	A0A2T3Z5U5	Uncharacterized protein.	Uncharacterized protein.	0.823
A0A2T3YXQ3	A0A2T3ZF83	Uncharacterized protein.	Uncharacterized protein.	0.905
A0A2T3YXQ3	A0A2T3ZFL0	Uncharacterized protein.	Uncharacterized protein.	0.745
A0A2T3Z5U5	A0A2T3YXQ3	Uncharacterized protein.	Uncharacterized protein.	0.823
A0A2T3Z5U5	A0A2T3ZF83	Uncharacterized protein.	Uncharacterized protein.	0.742
A0A2T3ZF83	A0A2T3YT28	Uncharacterized protein.	Uncharacterized protein.	0.806
A0A2T3ZF83	A0A2T3YW86	Uncharacterized protein.	Uncharacterized protein.	0.834
A0A2T3ZF83	A0A2T3YXQ3	Uncharacterized protein.	Uncharacterized protein.	0.905
A0A2T3ZF83	A0A2T3Z5U5	Uncharacterized protein.	Uncharacterized protein.	0.742
A0A2T3ZF83	A0A2T3ZFL0	Uncharacterized protein.	Uncharacterized protein.	0.752
A0A2T3ZFL0	A0A2T3YT28	Uncharacterized protein.	Uncharacterized protein.	0.502
A0A2T3ZFL0	A0A2T3YXQ3	Uncharacterized protein.	Uncharacterized protein.	0.745
A0A2T3ZFL0	A0A2T3ZF83	Uncharacterized protein.	Uncharacterized protein.	0.752