(8 nodes) Proton-transporting two-sector ATPase complex network (Thermococcus sp. 4557)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	atpD	V-type ATP synthase subunit D; Produces ATP from ADP in the presence of a proton gradient across the membrane. (217 aa)
	atpB	V-type ATP synthase subunit B; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal beta chain is a regulatory subunit. (463 aa)
	atpA	V-type ATP synthase subunit A; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family. (585 aa)
	atpF	V-type ATP synthase subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane. (102 aa)
	atpC	V-type ATP synthase subunit C; Produces ATP from ADP in the presence of a proton gradient across the membrane. (366 aa)
	atpE	V-type ATP synthase subunit E; Produces ATP from ADP in the presence of a proton gradient across the membrane. (203 aa)
	GQS_06510	COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K. (162 aa)
	GQS_06515	COG1269 Archaeal/vacuolar-type H+-ATPase subunit I; Belongs to the V-ATPase 116 kDa subunit family. (659 aa)

Your Current Organism:

Thermococcus sp. 4557

NCBI taxonomy Id: 1042877
Other names: T. sp. 4557

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GQS_06510	GQS_06515	GQS_06510	GQS_06515	COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K.	COG1269 Archaeal/vacuolar-type H+-ATPase subunit I; Belongs to the V-ATPase 116 kDa subunit family.	0.999
GQS_06510	atpA	GQS_06510	GQS_06490	COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K.	V-type ATP synthase subunit A; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.	0.999
GQS_06510	atpB	GQS_06510	GQS_06485	COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K.	V-type ATP synthase subunit B; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal beta chain is a regulatory subunit.	0.999
GQS_06510	atpC	GQS_06510	GQS_06500	COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K.	V-type ATP synthase subunit C; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
GQS_06510	atpD	GQS_06510	GQS_06480	COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K.	V-type ATP synthase subunit D; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
GQS_06510	atpE	GQS_06510	GQS_06505	COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K.	V-type ATP synthase subunit E; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
GQS_06510	atpF	GQS_06510	GQS_06495	COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K.	V-type ATP synthase subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
GQS_06515	GQS_06510	GQS_06515	GQS_06510	COG1269 Archaeal/vacuolar-type H+-ATPase subunit I; Belongs to the V-ATPase 116 kDa subunit family.	COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K.	0.999
GQS_06515	atpA	GQS_06515	GQS_06490	COG1269 Archaeal/vacuolar-type H+-ATPase subunit I; Belongs to the V-ATPase 116 kDa subunit family.	V-type ATP synthase subunit A; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.	0.999
GQS_06515	atpB	GQS_06515	GQS_06485	COG1269 Archaeal/vacuolar-type H+-ATPase subunit I; Belongs to the V-ATPase 116 kDa subunit family.	V-type ATP synthase subunit B; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal beta chain is a regulatory subunit.	0.999
GQS_06515	atpC	GQS_06515	GQS_06500	COG1269 Archaeal/vacuolar-type H+-ATPase subunit I; Belongs to the V-ATPase 116 kDa subunit family.	V-type ATP synthase subunit C; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
GQS_06515	atpD	GQS_06515	GQS_06480	COG1269 Archaeal/vacuolar-type H+-ATPase subunit I; Belongs to the V-ATPase 116 kDa subunit family.	V-type ATP synthase subunit D; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
GQS_06515	atpE	GQS_06515	GQS_06505	COG1269 Archaeal/vacuolar-type H+-ATPase subunit I; Belongs to the V-ATPase 116 kDa subunit family.	V-type ATP synthase subunit E; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
GQS_06515	atpF	GQS_06515	GQS_06495	COG1269 Archaeal/vacuolar-type H+-ATPase subunit I; Belongs to the V-ATPase 116 kDa subunit family.	V-type ATP synthase subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
atpA	GQS_06510	GQS_06490	GQS_06510	V-type ATP synthase subunit A; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.	COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K.	0.999
atpA	GQS_06515	GQS_06490	GQS_06515	V-type ATP synthase subunit A; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.	COG1269 Archaeal/vacuolar-type H+-ATPase subunit I; Belongs to the V-ATPase 116 kDa subunit family.	0.999
atpA	atpB	GQS_06490	GQS_06485	V-type ATP synthase subunit A; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.	V-type ATP synthase subunit B; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal beta chain is a regulatory subunit.	0.999
atpA	atpC	GQS_06490	GQS_06500	V-type ATP synthase subunit A; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.	V-type ATP synthase subunit C; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
atpA	atpD	GQS_06490	GQS_06480	V-type ATP synthase subunit A; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.	V-type ATP synthase subunit D; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
atpA	atpE	GQS_06490	GQS_06505	V-type ATP synthase subunit A; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.	V-type ATP synthase subunit E; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999