(10 nodes) L-arabinitol 4-dehydrogenase activity, and L-xylulose reductase (NADP+) activity network (Aureobasidium subglaciale)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A074XXY8	Uncharacterized protein. (345 aa)
	A0A074Y486	Uncharacterized protein. (260 aa)
	A0A074Y802	ADH_zinc_N domain-containing protein. (211 aa)
	A0A074Y8G2	Uncharacterized protein. (274 aa)
	A0A074YAT0	Uncharacterized protein. (293 aa)
	A0A074YL28	Uncharacterized protein. (274 aa)
	A0A074YQG5	Uncharacterized protein. (374 aa)
	A0A074YZP5	Uncharacterized protein. (311 aa)
	A0A074ZCD2	PKS_ER domain-containing protein. (377 aa)
	A0A074ZLB8	Uncharacterized protein. (266 aa)

Your Current Organism:

Aureobasidium subglaciale

NCBI taxonomy Id: 1043005
Other names: A. subglaciale EXF-2481, Aureobasidium pullulans var. subglaciale EXF-2481, Aureobasidium subglaciale EXF-2481

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A074XXY8	A0A074Y802	Uncharacterized protein.	ADH_zinc_N domain-containing protein.	0.670
A0A074XXY8	A0A074YQG5	Uncharacterized protein.	Uncharacterized protein.	0.657
A0A074XXY8	A0A074YZP5	Uncharacterized protein.	Uncharacterized protein.	0.657
A0A074XXY8	A0A074ZCD2	Uncharacterized protein.	PKS_ER domain-containing protein.	0.670
A0A074Y486	A0A074Y802	Uncharacterized protein.	ADH_zinc_N domain-containing protein.	0.539
A0A074Y486	A0A074Y8G2	Uncharacterized protein.	Uncharacterized protein.	0.403
A0A074Y486	A0A074YAT0	Uncharacterized protein.	Uncharacterized protein.	0.408
A0A074Y486	A0A074YL28	Uncharacterized protein.	Uncharacterized protein.	0.400
A0A074Y486	A0A074YQG5	Uncharacterized protein.	Uncharacterized protein.	0.539
A0A074Y486	A0A074YZP5	Uncharacterized protein.	Uncharacterized protein.	0.539
A0A074Y486	A0A074ZCD2	Uncharacterized protein.	PKS_ER domain-containing protein.	0.539
A0A074Y802	A0A074XXY8	ADH_zinc_N domain-containing protein.	Uncharacterized protein.	0.670
A0A074Y802	A0A074Y486	ADH_zinc_N domain-containing protein.	Uncharacterized protein.	0.539
A0A074Y802	A0A074Y8G2	ADH_zinc_N domain-containing protein.	Uncharacterized protein.	0.539
A0A074Y802	A0A074YAT0	ADH_zinc_N domain-containing protein.	Uncharacterized protein.	0.669
A0A074Y802	A0A074YL28	ADH_zinc_N domain-containing protein.	Uncharacterized protein.	0.539
A0A074Y802	A0A074YQG5	ADH_zinc_N domain-containing protein.	Uncharacterized protein.	0.506
A0A074Y802	A0A074YZP5	ADH_zinc_N domain-containing protein.	Uncharacterized protein.	0.538
A0A074Y802	A0A074ZLB8	ADH_zinc_N domain-containing protein.	Uncharacterized protein.	0.670
A0A074Y8G2	A0A074Y486	Uncharacterized protein.	Uncharacterized protein.	0.403