27 items (Camponotus floridanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	EAG_00878	ATP-dependent RNA helicase DDX42; Belongs to the DEAD box helicase family. (769 aa)
	EAG_00883	U1 small nuclear ribonucleoprotein A. (184 aa)
	EAG_03072	116 kDa U5 small nuclear ribonucleoprotein component. (981 aa)
	EAG_08447	U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family. (175 aa)
	EAG_12501	Probable U2 small nuclear ribonucleoprotein A. (246 aa)
	EAG_11322	Small nuclear ribonucleoprotein-associated protein. (209 aa)
	EAG_01953	Pre-mRNA branch site p14-like protein. (125 aa)
	EAG_15996	Small nuclear ribonucleoprotein F; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (84 aa)
	EAG_05499	Uncharacterized protein. (572 aa)
	EAG_07570	U7 snRNA-associated Sm-like protein LSm10. (145 aa)
	EAG_13350	Small nuclear ribonucleoprotein Sm D3. (142 aa)
	EAG_05643	Putative U5 small nuclear ribonucleoprotein 200 kDa helicase. (2140 aa)
	EAG_11541	Splicing factor 3B subunit 1. (1267 aa)
	EAG_02846	Probable ATP-dependent RNA helicase DDX23; Belongs to the DEAD box helicase family. (669 aa)
	EAG_04068	U4/U6.U5 tri-snRNP-associated protein 1. (746 aa)
	EAG_04328	U4/U6 small nuclear ribonucleoprotein Prp31. (489 aa)
	EAG_11000	Small nuclear ribonucleoprotein Sm D2. (137 aa)
	EAG_07750	WD repeat-containing protein 57. (349 aa)
	EAG_09187	Pre-mRNA-processing-splicing factor 8. (2372 aa)
	EAG_10876	Splicing factor 3B subunit 2. (703 aa)
	EAG_10317	Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (85 aa)
	EAG_02348	PHD finger-like domain-containing protein 5A. (110 aa)
	EAG_12066	Small nuclear ribonucleoprotein G. (76 aa)
	EAG_09132	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
	EAG_01724	Pre-mRNA-processing factor 6. (929 aa)
	EAG_05289	Splicing factor 3B subunit 4. (409 aa)
	EAG_08768	Splicing factor 3B subunit 3. (1201 aa)

Your Current Organism:

Camponotus floridanus

NCBI taxonomy Id: 104421
Other names: C. floridanus, Camponotus floridana, Florida carpenter ant

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EAG_00878	EAG_00883	E1ZW98	E1ZWA3	ATP-dependent RNA helicase DDX42; Belongs to the DEAD box helicase family.	U1 small nuclear ribonucleoprotein A.	0.427
EAG_00878	EAG_01724	E1ZW98	E2AX89	ATP-dependent RNA helicase DDX42; Belongs to the DEAD box helicase family.	Pre-mRNA-processing factor 6.	0.624
EAG_00878	EAG_01953	E1ZW98	E2A1Z6	ATP-dependent RNA helicase DDX42; Belongs to the DEAD box helicase family.	Pre-mRNA branch site p14-like protein.	0.992
EAG_00878	EAG_02348	E1ZW98	E2AR49	ATP-dependent RNA helicase DDX42; Belongs to the DEAD box helicase family.	PHD finger-like domain-containing protein 5A.	0.991
EAG_00878	EAG_05289	E1ZW98	E2AZ89	ATP-dependent RNA helicase DDX42; Belongs to the DEAD box helicase family.	Splicing factor 3B subunit 4.	0.995
EAG_00878	EAG_05499	E1ZW98	E2A370	ATP-dependent RNA helicase DDX42; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.710
EAG_00878	EAG_07570	E1ZW98	E2A453	ATP-dependent RNA helicase DDX42; Belongs to the DEAD box helicase family.	U7 snRNA-associated Sm-like protein LSm10.	0.617
EAG_00878	EAG_08447	E1ZW98	E1ZYW0	ATP-dependent RNA helicase DDX42; Belongs to the DEAD box helicase family.	U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family.	0.535
EAG_00878	EAG_08768	E1ZW98	E2B1T5	ATP-dependent RNA helicase DDX42; Belongs to the DEAD box helicase family.	Splicing factor 3B subunit 3.	0.998
EAG_00878	EAG_09187	E1ZW98	E2AKW7	ATP-dependent RNA helicase DDX42; Belongs to the DEAD box helicase family.	Pre-mRNA-processing-splicing factor 8.	0.429
EAG_00878	EAG_10317	E1ZW98	E2AM09	ATP-dependent RNA helicase DDX42; Belongs to the DEAD box helicase family.	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.995
EAG_00878	EAG_10876	E1ZW98	E2ALL1	ATP-dependent RNA helicase DDX42; Belongs to the DEAD box helicase family.	Splicing factor 3B subunit 2.	0.995
EAG_00878	EAG_11000	E1ZW98	E2AJ66	ATP-dependent RNA helicase DDX42; Belongs to the DEAD box helicase family.	Small nuclear ribonucleoprotein Sm D2.	0.677
EAG_00878	EAG_11322	E1ZW98	E2A0X7	ATP-dependent RNA helicase DDX42; Belongs to the DEAD box helicase family.	Small nuclear ribonucleoprotein-associated protein.	0.605
EAG_00878	EAG_11541	E1ZW98	E2AAN4	ATP-dependent RNA helicase DDX42; Belongs to the DEAD box helicase family.	Splicing factor 3B subunit 1.	0.999
EAG_00878	EAG_12066	E1ZW98	E2AS58	ATP-dependent RNA helicase DDX42; Belongs to the DEAD box helicase family.	Small nuclear ribonucleoprotein G.	0.669
EAG_00878	EAG_12501	E1ZW98	E1ZZG9	ATP-dependent RNA helicase DDX42; Belongs to the DEAD box helicase family.	Probable U2 small nuclear ribonucleoprotein A.	0.504
EAG_00878	EAG_13350	E1ZW98	E2A5P6	ATP-dependent RNA helicase DDX42; Belongs to the DEAD box helicase family.	Small nuclear ribonucleoprotein Sm D3.	0.687
EAG_00878	EAG_15996	E1ZW98	E2A352	ATP-dependent RNA helicase DDX42; Belongs to the DEAD box helicase family.	Small nuclear ribonucleoprotein F; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.712
EAG_00883	EAG_00878	E1ZWA3	E1ZW98	U1 small nuclear ribonucleoprotein A.	ATP-dependent RNA helicase DDX42; Belongs to the DEAD box helicase family.	0.427