(14 nodes) Synaptic vesicle membrane organization network (Camponotus floridanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	EAG_02646	Teneurin-3. (2600 aa)
	EAG_11953	Neuroligin-1. (585 aa)
	EAG_11950	Neuroligin-1. (125 aa)
	EAG_16385	Synaptosomal-associated protein; Belongs to the SNAP-25 family. (162 aa)
	EAG_10176	Syntaxin-1A. (53 aa)
	EAG_07952	AP-3 complex subunit delta-1. (1111 aa)
	EAG_11270	Soluble NSF attachment protein. (292 aa)
	EAG_16071	Teneurin-3. (3344 aa)
	EAG_07888	Neuroligin-1. (812 aa)
	EAG_01453	Synaptosomal-associated protein 29. (544 aa)
	EAG_11829	Dynamin; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (862 aa)
	EAG_00522	Synaptosomal-associated protein 29. (243 aa)
	EAG_00922	Neuroligin-1. (102 aa)
	EAG_03571	Uncharacterized protein. (385 aa)

Your Current Organism:

Camponotus floridanus

NCBI taxonomy Id: 104421
Other names: C. floridanus, Camponotus floridana, Florida carpenter ant

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EAG_00522	EAG_10176	E2ADB4	E1ZVJ9	Synaptosomal-associated protein 29.	Syntaxin-1A.	0.715
EAG_00522	EAG_11270	E2ADB4	E2A0S5	Synaptosomal-associated protein 29.	Soluble NSF attachment protein.	0.757
EAG_00922	EAG_11950	E2AN71	E2AW74	Neuroligin-1.	Neuroligin-1.	0.698
EAG_00922	EAG_11953	E2AN71	E2AW76	Neuroligin-1.	Neuroligin-1.	0.544
EAG_01453	EAG_10176	E2A8Q7	E1ZVJ9	Synaptosomal-associated protein 29.	Syntaxin-1A.	0.715
EAG_01453	EAG_11270	E2A8Q7	E2A0S5	Synaptosomal-associated protein 29.	Soluble NSF attachment protein.	0.757
EAG_10176	EAG_00522	E1ZVJ9	E2ADB4	Syntaxin-1A.	Synaptosomal-associated protein 29.	0.715
EAG_10176	EAG_01453	E1ZVJ9	E2A8Q7	Syntaxin-1A.	Synaptosomal-associated protein 29.	0.715
EAG_10176	EAG_11270	E1ZVJ9	E2A0S5	Syntaxin-1A.	Soluble NSF attachment protein.	0.927
EAG_10176	EAG_16385	E1ZVJ9	E2AV89	Syntaxin-1A.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.958
EAG_11270	EAG_00522	E2A0S5	E2ADB4	Soluble NSF attachment protein.	Synaptosomal-associated protein 29.	0.757
EAG_11270	EAG_01453	E2A0S5	E2A8Q7	Soluble NSF attachment protein.	Synaptosomal-associated protein 29.	0.757
EAG_11270	EAG_10176	E2A0S5	E1ZVJ9	Soluble NSF attachment protein.	Syntaxin-1A.	0.927
EAG_11270	EAG_16385	E2A0S5	E2AV89	Soluble NSF attachment protein.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.984
EAG_11950	EAG_00922	E2AW74	E2AN71	Neuroligin-1.	Neuroligin-1.	0.698
EAG_11950	EAG_11953	E2AW74	E2AW76	Neuroligin-1.	Neuroligin-1.	0.622
EAG_11953	EAG_00922	E2AW76	E2AN71	Neuroligin-1.	Neuroligin-1.	0.544
EAG_11953	EAG_11950	E2AW76	E2AW74	Neuroligin-1.	Neuroligin-1.	0.622
EAG_16385	EAG_10176	E2AV89	E1ZVJ9	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	Syntaxin-1A.	0.958
EAG_16385	EAG_11270	E2AV89	E2A0S5	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	Soluble NSF attachment protein.	0.984