STRINGSTRING
DSC_00245 DSC_00245 DSC_00250 DSC_00250 DSC_00260 DSC_00260 cca cca DSC_02670 DSC_02670 bamD bamD apaH apaH apaG apaG ksgA ksgA pdxA pdxA surA surA lptD lptD DSC_05460 DSC_05460 DSC_05465 DSC_05465 DSC_06845 DSC_06845 bamE bamE orn orn bamB bamB DSC_10300 DSC_10300 DSC_10310 DSC_10310 rlmN rlmN DSC_10325 DSC_10325 bamA bamA lptE lptE DSC_12035 DSC_12035 DSC_12380 DSC_12380 DSC_12385 DSC_12385 dsbB dsbB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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DSC_00245Exported thiol:disulfide interchange protein; COG0526 Thiol-disulfide isomerase and thioredoxins. (213 aa)
DSC_00250DSBA oxidoreductase; COG0526 Thiol-disulfide isomerase and thioredoxins. (261 aa)
DSC_00260COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains). (667 aa)
ccatRNA nucleotidyltransferase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases. (411 aa)
DSC_02670Disulfide isomerase; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. (277 aa)
bamDCompetence lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (292 aa)
apaHDiadenosine tetraphosphatase; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family. (285 aa)
apaGCO2+/MG2+ efflux protein ApaG; COG2967 Uncharacterized protein affecting Mg2+/Co2+ transport. (126 aa)
ksgA16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. (270 aa)
pdxA4-hydroxythreonine-4-phosphate dehydrogenase; Catalyzes the NAD(P)-dependent oxidation of 4-(phosphooxy)-L- threonine (HTP) into 2-amino-3-oxo-4-(phosphooxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP). (324 aa)
surAPutative survival protein SurA; Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation. (477 aa)
lptDOrganic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. (803 aa)
DSC_05460Hypothetical protein; Belongs to the Cob(I)alamin adenosyltransferase family. (187 aa)
DSC_05465Hypothetical protein. (206 aa)
DSC_06845Putative secreted protein. (173 aa)
bamESmall membrane lipoprotein a (smpa); Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (131 aa)
ornOligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family. (189 aa)
bamBPutative quinoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (395 aa)
DSC_10300COG2976 Uncharacterized protein conserved in bacteria. (212 aa)
DSC_10310Fimbrial biogenesis protein; COG3063 Tfp pilus assembly protein PilF. (271 aa)
rlmNHypothetical protein; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family. (403 aa)
DSC_10325COG1309 Transcriptional regulator. (211 aa)
bamAOuter membrane antigen; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (828 aa)
lptERare lipoprotein b family; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane. (173 aa)
DSC_12035COG0760 Parvulin-like peptidyl-prolyl isomerase. (655 aa)
DSC_12380ClpXP protease specificity-enhancing factor; COG2969 Stringent starvation protein B. (142 aa)
DSC_12385Stringent starvation protein A; COG0625 Glutathione S-transferase. (205 aa)
dsbBDisulfide bond formation protein B; Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein; Belongs to the DsbB family. (180 aa)
Your Current Organism:
Pseudoxanthomonas spadix
NCBI taxonomy Id: 1045855
Other names: P. spadix BD-a59, Pseudoxanthomonas spadix BD-a59, Pseudoxanthomonas spadix str. BD-a59, Pseudoxanthomonas spadix strain BD-a59
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