STRINGSTRING
DSC_00890 DSC_00890 DSC_00895 DSC_00895 DSC_00900 DSC_00900 DSC_00905 DSC_00905 DSC_06325 DSC_06325 DSC_06330 DSC_06330 DSC_06345 DSC_06345 coaD coaD DSC_06355 DSC_06355 DSC_07785 DSC_07785 DSC_07790 DSC_07790 DSC_07795 DSC_07795 smc smc der der cmk cmk DSC_12475 DSC_12475 DSC_12615 DSC_12615 DSC_12620 DSC_12620 DSC_14945 DSC_14945 DSC_14950 DSC_14950 DSC_14955 DSC_14955 DSC_14960 DSC_14960 DSC_14965 DSC_14965 DSC_14970 DSC_14970
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
DSC_00890Hypothetical protein. (52 aa)
DSC_00895COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases). (320 aa)
DSC_00900COG4798 Predicted methyltransferase. (278 aa)
DSC_00905Ribosomal large subunit pseudouridine synthase e protein; COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; Belongs to the pseudouridine synthase RsuA family. (256 aa)
DSC_06325Oxidative damage protection protein; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes. (92 aa)
DSC_06330A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. (386 aa)
DSC_06345Putative methyltransferase; Specifically methylates the guanine in position 966 of 16S rRNA in the assembled 30S particle; Belongs to the methyltransferase superfamily. RsmD family. (184 aa)
coaDPhosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. (166 aa)
DSC_06355Signal peptide protein. (166 aa)
DSC_07785Ribosomal large subunit pseudouridine synthase b (rrna pseudouridylate synthase b) protein; COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; Belongs to the pseudouridine synthase RsuA family. (526 aa)
DSC_07790Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. (319 aa)
DSC_07795Segregation and condensation protein A; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves. (301 aa)
smcChromosome segregation protein; Required for chromosome condensation and partitioning. Belongs to the SMC family. (1170 aa)
derGTP-binding protein Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. (466 aa)
cmkCOG0283 Cytidylate kinase. (220 aa)
DSC_12475Putative pseudouridine synthase; COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; Belongs to the pseudouridine synthase RsuA family. (242 aa)
DSC_12615COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; Belongs to the pseudouridine synthase RsuA family. (252 aa)
DSC_12620Putative secreted protein. (165 aa)
DSC_14945HAD-superfamily hydrolase; COG0637 Predicted phosphatase/phosphohexomutase. (140 aa)
DSC_14950Hypothetical protein; COG0637 Predicted phosphatase/phosphohexomutase. (85 aa)
DSC_14955Ribosomal small subunit pseudouridylate synthase; COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; Belongs to the pseudouridine synthase RsuA family. (236 aa)
DSC_14960Ribosomal RNA small subunit methyltransferase C; COG2813 16S RNA G1207 methylase RsmC; Belongs to the methyltransferase superfamily. (365 aa)
DSC_14965Integrase catalytic subunit; COG2801 Transposase and inactivated derivatives. (107 aa)
DSC_14970Hypothetical protein. (138 aa)
Your Current Organism:
Pseudoxanthomonas spadix
NCBI taxonomy Id: 1045855
Other names: P. spadix BD-a59, Pseudoxanthomonas spadix BD-a59, Pseudoxanthomonas spadix str. BD-a59, Pseudoxanthomonas spadix strain BD-a59
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