(8 nodes) Amide binding network (Pseudoxanthomonas spadix)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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Your Input:
	DSC_04960	Penicillin-binding protein 1A; COG5009 Membrane carboxypeptidase/penicillin-binding protein. (822 aa)
	DSC_03320	COG0768 Cell division protein FtsI/penicillin-binding protein 2. (693 aa)
	ftsI	Cell division protein ftsi; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily. (631 aa)
	secY	Preprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. (444 aa)
	DSC_09600	Hypothetical protein; COG0354 Predicted aminomethyltransferase related to GcvT. (288 aa)
	DSC_07910	Penicillin-binding protein 1C; COG4953 Membrane carboxypeptidase/penicillin-binding protein PbpC. (790 aa)
	surA	Putative survival protein SurA; Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation. (477 aa)
	DSC_05035	Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits). (812 aa)

Your Current Organism:

Pseudoxanthomonas spadix

NCBI taxonomy Id: 1045855
Other names: P. spadix BD-a59, Pseudoxanthomonas spadix BD-a59, Pseudoxanthomonas spadix str. BD-a59, Pseudoxanthomonas spadix strain BD-a59

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DSC_03320	DSC_04960	DSC_03320	DSC_04960	COG0768 Cell division protein FtsI/penicillin-binding protein 2.	Penicillin-binding protein 1A; COG5009 Membrane carboxypeptidase/penicillin-binding protein.	0.741
DSC_03320	DSC_05035	DSC_03320	DSC_05035	COG0768 Cell division protein FtsI/penicillin-binding protein 2.	Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).	0.786
DSC_03320	ftsI	DSC_03320	DSC_02855	COG0768 Cell division protein FtsI/penicillin-binding protein 2.	Cell division protein ftsi; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily.	0.942
DSC_04960	DSC_03320	DSC_04960	DSC_03320	Penicillin-binding protein 1A; COG5009 Membrane carboxypeptidase/penicillin-binding protein.	COG0768 Cell division protein FtsI/penicillin-binding protein 2.	0.741
DSC_04960	DSC_05035	DSC_04960	DSC_05035	Penicillin-binding protein 1A; COG5009 Membrane carboxypeptidase/penicillin-binding protein.	Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).	0.952
DSC_04960	DSC_07910	DSC_04960	DSC_07910	Penicillin-binding protein 1A; COG5009 Membrane carboxypeptidase/penicillin-binding protein.	Penicillin-binding protein 1C; COG4953 Membrane carboxypeptidase/penicillin-binding protein PbpC.	0.919
DSC_04960	ftsI	DSC_04960	DSC_02855	Penicillin-binding protein 1A; COG5009 Membrane carboxypeptidase/penicillin-binding protein.	Cell division protein ftsi; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily.	0.553
DSC_05035	DSC_03320	DSC_05035	DSC_03320	Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).	COG0768 Cell division protein FtsI/penicillin-binding protein 2.	0.786
DSC_05035	DSC_04960	DSC_05035	DSC_04960	Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).	Penicillin-binding protein 1A; COG5009 Membrane carboxypeptidase/penicillin-binding protein.	0.952
DSC_05035	DSC_07910	DSC_05035	DSC_07910	Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).	Penicillin-binding protein 1C; COG4953 Membrane carboxypeptidase/penicillin-binding protein PbpC.	0.915
DSC_05035	ftsI	DSC_05035	DSC_02855	Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).	Cell division protein ftsi; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily.	0.866
DSC_07910	DSC_04960	DSC_07910	DSC_04960	Penicillin-binding protein 1C; COG4953 Membrane carboxypeptidase/penicillin-binding protein PbpC.	Penicillin-binding protein 1A; COG5009 Membrane carboxypeptidase/penicillin-binding protein.	0.919
DSC_07910	DSC_05035	DSC_07910	DSC_05035	Penicillin-binding protein 1C; COG4953 Membrane carboxypeptidase/penicillin-binding protein PbpC.	Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).	0.915
ftsI	DSC_03320	DSC_02855	DSC_03320	Cell division protein ftsi; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily.	COG0768 Cell division protein FtsI/penicillin-binding protein 2.	0.942
ftsI	DSC_04960	DSC_02855	DSC_04960	Cell division protein ftsi; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily.	Penicillin-binding protein 1A; COG5009 Membrane carboxypeptidase/penicillin-binding protein.	0.553
ftsI	DSC_05035	DSC_02855	DSC_05035	Cell division protein ftsi; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily.	Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).	0.866
ftsI	surA	DSC_02855	DSC_05445	Cell division protein ftsi; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily.	Putative survival protein SurA; Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation.	0.480
surA	ftsI	DSC_05445	DSC_02855	Putative survival protein SurA; Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation.	Cell division protein ftsi; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily.	0.480

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