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flgK flgK DSC_12675 DSC_12675 deaD deaD rsfS rsfS DSC_10600 DSC_10600 rplT rplT flgA flgA DSC_03215 DSC_03215 flhA flhA DSC_03085 DSC_03085 DSC_03090 DSC_03090 DSC_03130 DSC_03130 DSC_03190 DSC_03190
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
flgKCOG1256 Flagellar hook-associated protein; Belongs to the flagella basal body rod proteins family. (631 aa)
DSC_12675GTP-binding protein TypA; COG1217 Predicted membrane GTPase involved in stress response. (615 aa)
deaDATP-dependent RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. (646 aa)
rsfSIojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. (137 aa)
DSC_10600COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein. (101 aa)
rplT50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (119 aa)
flgAFlagellar basal body P-ring biosynthesis protein FlgA; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P- ring assembly; Belongs to the FlgA family. (220 aa)
DSC_03215Flagellar rod assembly protein/muramidase FlgJ; COG3951 Rod binding protein. (397 aa)
flhAFlagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family. (694 aa)
DSC_03085Flagellar biosynthetic protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family. (262 aa)
DSC_03090COG1987 Flagellar biosynthesis pathway, component FliQ. (89 aa)
DSC_03130COG3144 Flagellar hook-length control protein. (463 aa)
DSC_03190Flagellar protein FliS; COG1516 Flagellin-specific chaperone FliS. (129 aa)
Your Current Organism:
Pseudoxanthomonas spadix
NCBI taxonomy Id: 1045855
Other names: P. spadix BD-a59, Pseudoxanthomonas spadix BD-a59, Pseudoxanthomonas spadix str. BD-a59, Pseudoxanthomonas spadix strain BD-a59
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