STRINGSTRING
DSC_01930 DSC_01930 DSC_02720 DSC_02720 DSC_02820 DSC_02820 DSC_03285 DSC_03285 DSC_03330 DSC_03330 rlpA rlpA DSC_03390 DSC_03390 DSC_03455 DSC_03455 DSC_03555 DSC_03555 DSC_03740 DSC_03740 DSC_04315 DSC_04315 pal pal mtgA mtgA DSC_04960 DSC_04960 DSC_04965 DSC_04965 DSC_04970 DSC_04970 DSC_04985 DSC_04985 DSC_05035 DSC_05035 bamD bamD DSC_05070 DSC_05070 DSC_05110 DSC_05110 lptD lptD DSC_05760 DSC_05760 DSC_00160 DSC_00160 DSC_00260 DSC_00260 DSC_00785 DSC_00785 DSC_01210 DSC_01210 mutM mutM DSC_01410 DSC_01410 DSC_01510 DSC_01510 DSC_01635 DSC_01635 DSC_05775 DSC_05775 DSC_05850 DSC_05850 DSC_06305 DSC_06305 DSC_06380 DSC_06380 DSC_06570 DSC_06570 DSC_06635 DSC_06635 DSC_06845 DSC_06845 DSC_06935 DSC_06935 DSC_06965 DSC_06965 DSC_07175 DSC_07175 DSC_07720 DSC_07720 DSC_07815 DSC_07815 DSC_07920 DSC_07920 DSC_08065 DSC_08065 DSC_08335 DSC_08335 DSC_08540 DSC_08540 bamE bamE DSC_09010 DSC_09010 DSC_09235 DSC_09235 DSC_09390 DSC_09390 DSC_09615 DSC_09615 DSC_09640 DSC_09640 DSC_09655 DSC_09655 DSC_09815 DSC_09815 DSC_09900 DSC_09900 bamB bamB bamA bamA DSC_10950 DSC_10950 DSC_10955 DSC_10955 DSC_11005 DSC_11005 DSC_11270 DSC_11270 lptE lptE DSC_12320 DSC_12320 DSC_12405 DSC_12405 DSC_12575 DSC_12575 DSC_12620 DSC_12620 lolB lolB DSC_13230 DSC_13230 DSC_13770 DSC_13770 DSC_14225 DSC_14225 DSC_14470 DSC_14470 DSC_15405 DSC_15405 DSC_15625 DSC_15625
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
DSC_01930COG2951 Membrane-bound lytic murein transglycosylase B. (408 aa)
DSC_02720General secretion pathway protein L; COG3166 Tfp pilus assembly protein PilN. (381 aa)
DSC_02820COG3107 Putative lipoprotein. (461 aa)
DSC_03285COG3746 Phosphate-selective porin. (369 aa)
DSC_03330COG2951 Membrane-bound lytic murein transglycosylase B. (409 aa)
rlpARare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. (460 aa)
DSC_03390COG1629 Outer membrane receptor proteins, mostly Fe transport. (975 aa)
DSC_03455Hypothetical protein. (1047 aa)
DSC_03555TonB-dependent copper receptor; COG1629 Outer membrane receptor proteins, mostly Fe transport. (669 aa)
DSC_03740COG3667 Uncharacterized protein involved in copper resistance. (342 aa)
DSC_04315Propeptide PepSY amd peptidase M4; COG3212 Predicted membrane protein. (95 aa)
palOuter membrane protein P6 precursor; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. (171 aa)
mtgAMonofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family. (237 aa)
DSC_04960Penicillin-binding protein 1A; COG5009 Membrane carboxypeptidase/penicillin-binding protein. (822 aa)
DSC_04965COG4972 Tfp pilus assembly protein, ATPase PilM. (352 aa)
DSC_04970COG3166 Tfp pilus assembly protein PilN. (235 aa)
DSC_04985Fimbrial assembly protein; COG4796 Type II secretory pathway, component HofQ. (615 aa)
DSC_05035Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits). (812 aa)
bamDCompetence lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (292 aa)
DSC_05070Hypothetical protein. (158 aa)
DSC_05110COG1629 Outer membrane receptor proteins, mostly Fe transport. (799 aa)
lptDOrganic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. (803 aa)
DSC_05760COG3656 Predicted periplasmic protein. (175 aa)
DSC_00160Aminotransferase AlaT; COG0436 Aspartate/tyrosine/aromatic aminotransferase. (439 aa)
DSC_00260COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains). (667 aa)
DSC_00785COG1629 Outer membrane receptor proteins, mostly Fe transport. (740 aa)
DSC_01210Hypothetical protein; COG5463 Predicted integral membrane protein. (178 aa)
mutMFormamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. (270 aa)
DSC_01410COG2503 Predicted secreted acid phosphatase. (289 aa)
DSC_01510COG0729 Outer membrane protein. (682 aa)
DSC_01635COG1629 Outer membrane receptor proteins, mostly Fe transport. (706 aa)
DSC_05775Catecholate siderophore receptor Fiu; COG4774 Outer membrane receptor for monomeric catechols. (795 aa)
DSC_05850Hypothetical protein. (214 aa)
DSC_06305Outer membrane lipoprotein; Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids. (208 aa)
DSC_06380COG1629 Outer membrane receptor proteins, mostly Fe transport. (777 aa)
DSC_06570NodT family RND efflux system outer membrane lipoprotein; COG1538 Outer membrane protein. (491 aa)
DSC_06635TonB-dependent siderophore receptor; COG1629 Outer membrane receptor proteins, mostly Fe transport. (724 aa)
DSC_06845Putative secreted protein. (173 aa)
DSC_06935COG1629 Outer membrane receptor proteins, mostly Fe transport. (948 aa)
DSC_06965Hypothetical protein. (153 aa)
DSC_07175COG0436 Aspartate/tyrosine/aromatic aminotransferase. (388 aa)
DSC_07720COG1538 Outer membrane protein. (505 aa)
DSC_07815COG1629 Outer membrane receptor proteins, mostly Fe transport. (1003 aa)
DSC_07920Redoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily. (160 aa)
DSC_08065Hypothetical protein. (144 aa)
DSC_08335RND efflux system, outer membrane lipoprotein, NodT family; COG1538 Outer membrane protein. (493 aa)
DSC_08540OmpA family outer membrane lipoprotein; COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins. (223 aa)
bamESmall membrane lipoprotein a (smpa); Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (131 aa)
DSC_09010COG1629 Outer membrane receptor proteins, mostly Fe transport. (712 aa)
DSC_09235COG0436 Aspartate/tyrosine/aromatic aminotransferase. (382 aa)
DSC_09390Aromatic hydrocarbon degradation membrane protein; COG2067 Long-chain fatty acid transport protein. (458 aa)
DSC_09615Putative secreted protein; COG3134 Predicted outer membrane lipoprotein. (272 aa)
DSC_09640Outer membrane antigen lipoprotein. (153 aa)
DSC_09655Phospholipase; Hydrolysis of phosphatidylcholine with phospholipase A2 (EC 3.1.1.4) and phospholipase A1 (EC 3.1.1.32) activities. Belongs to the phospholipase A1 family. (390 aa)
DSC_09815Putative oxidoreductase; COG2072 Predicted flavoprotein involved in K+ transport. (472 aa)
DSC_09900COG0726 Predicted xylanase/chitin deacetylase. (311 aa)
bamBPutative quinoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (395 aa)
bamAOuter membrane antigen; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (828 aa)
DSC_10950Hypothetical protein. (496 aa)
DSC_10955COG1629 Outer membrane receptor proteins, mostly Fe transport. (878 aa)
DSC_11005General secretion pathway protein L; COG3297 Type II secretory pathway, component PulL. (369 aa)
DSC_11270Oar protein; COG1629 Outer membrane receptor proteins, mostly Fe transport. (1016 aa)
lptERare lipoprotein b family; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane. (173 aa)
DSC_12320TonB-dependent outer membrane receptor oar-like protein. (1079 aa)
DSC_12405COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains). (300 aa)
DSC_12575COG4772 Outer membrane receptor for Fe3+-dicitrate. (769 aa)
DSC_12620Putative secreted protein. (165 aa)
lolBOuter membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein. (213 aa)
DSC_13230COG3667 Uncharacterized protein involved in copper resistance. (378 aa)
DSC_13770COG4771 Outer membrane receptor for ferrienterochelin and colicins. (1011 aa)
DSC_14225COG1629 Outer membrane receptor proteins, mostly Fe transport. (769 aa)
DSC_14470Hypothetical protein. (120 aa)
DSC_15405COG2067 Long-chain fatty acid transport protein. (340 aa)
DSC_15625Putative TonB dependent receptor; COG1629 Outer membrane receptor proteins, mostly Fe transport. (969 aa)
Your Current Organism:
Pseudoxanthomonas spadix
NCBI taxonomy Id: 1045855
Other names: P. spadix BD-a59, Pseudoxanthomonas spadix BD-a59, Pseudoxanthomonas spadix str. BD-a59, Pseudoxanthomonas spadix strain BD-a59
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