STRINGSTRING
speE speE DSC_00170 DSC_00170 DSC_00295 DSC_00295 DSC_00900 DSC_00900 bioC bioC gidB gidB DSC_01670 DSC_01670 DSC_01985 DSC_01985 DSC_02135 DSC_02135 DSC_02150 DSC_02150 rsmH rsmH ubiE ubiE trmB trmB DSC_04180 DSC_04180 DSC_04690 DSC_04690 ksgA ksgA rlmM rlmM DSC_05555 DSC_05555 DSC_06345 DSC_06345 DSC_06495 DSC_06495 prmB prmB DSC_07230 DSC_07230 DSC_07435 DSC_07435 rlmJ rlmJ DSC_07560 DSC_07560 DSC_08140 DSC_08140 ubiG ubiG DSC_08405 DSC_08405 DSC_08760 DSC_08760 DSC_08775 DSC_08775 DSC_08875 DSC_08875 DSC_09195 DSC_09195 DSC_09550 DSC_09550 DSC_10030 DSC_10030 DSC_10470 DSC_10470 rlmE rlmE pcm pcm tpm tpm DSC_11350 DSC_11350 rumA rumA DSC_11740 DSC_11740 DSC_11750 DSC_11750 DSC_11755 DSC_11755 DSC_12015 DSC_12015 rlmL rlmL prmC prmC DSC_13740 DSC_13740 prmA prmA DSC_14960 DSC_14960 DSC_15155 DSC_15155 DSC_15190 DSC_15190 DSC_15455 DSC_15455
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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speESpermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine. (286 aa)
DSC_00170Putative methyltransferase; Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM). Belongs to the class I-like SAM-binding methyltransferase superfamily. Cx-SAM synthase family. (223 aa)
DSC_00295Hypothetical protein. (393 aa)
DSC_00900COG4798 Predicted methyltransferase. (278 aa)
bioCBiotin synthesis protein; Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L- methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway. (300 aa)
gidB16S rRNA methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. (217 aa)
DSC_01670Hypothetical protein; COG1092 Predicted SAM-dependent methyltransferases. (389 aa)
DSC_01985Hypothetical protein. (328 aa)
DSC_02135COG1002 Type II restriction enzyme, methylase subunits. (197 aa)
DSC_02150Site-specific DNA-methyltransferase (adenine-specific); COG0827 Adenine-specific DNA methylase. (539 aa)
rsmH16S rRNA m(4)C1402 methyltransferase; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. (375 aa)
ubiEUbiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2). (253 aa)
trmBtRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. (244 aa)
DSC_04180Hypothetical protein; COG0827 Adenine-specific DNA methylase. (369 aa)
DSC_0469016S rRNA methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. (433 aa)
ksgA16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. (270 aa)
rlmMPutative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily. (355 aa)
DSC_05555COG0500 SAM-dependent methyltransferases. (203 aa)
DSC_06345Putative methyltransferase; Specifically methylates the guanine in position 966 of 16S rRNA in the assembled 30S particle; Belongs to the methyltransferase superfamily. RsmD family. (184 aa)
DSC_06495Type 12 methyltransferase; COG0500 SAM-dependent methyltransferases. (197 aa)
prmBN5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue; Belongs to the protein N5-glutamine methyltransferase family. PrmB subfamily. (309 aa)
DSC_07230COG0286 Type I restriction-modification system methyltransferase subunit. (541 aa)
DSC_07435COG2230 Cyclopropane fatty acid synthase and related methyltransferases. (384 aa)
rlmJHypothetical protein; Specifically methylates the adenine in position 2030 of 23S rRNA. (285 aa)
DSC_07560COG0500 SAM-dependent methyltransferases. (99 aa)
DSC_08140COG0286 Type I restriction-modification system methyltransferase subunit. (120 aa)
ubiGBifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family. (240 aa)
DSC_08405COG0640 Predicted transcriptional regulators. (309 aa)
DSC_08760COG2230 Cyclopropane fatty acid synthase and related methyltransferases. (358 aa)
DSC_08775COG2230 Cyclopropane fatty acid synthase and related methyltransferases. (417 aa)
DSC_08875Putative methyl transferase; COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis. (258 aa)
DSC_09195Hypothetical protein; COG0500 SAM-dependent methyltransferases. (222 aa)
DSC_09550Adenine-specific DNA-methyltransferase; COG2189 Adenine specific DNA methylase Mod. (363 aa)
DSC_10030N-6 DNA methylase; COG0286 Type I restriction-modification system methyltransferase subunit. (495 aa)
DSC_10470Hypothetical protein; COG1352 Methylase of chemotaxis methyl-accepting proteins. (282 aa)
rlmECell division protein FtsJ; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. (210 aa)
pcmprotein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. (227 aa)
tpmThiopurine S-methyltransferase; COG0500 SAM-dependent methyltransferases; Belongs to the class I-like SAM-binding methyltransferase superfamily. TPMT family. (218 aa)
DSC_11350Type 11 methyltransferase; COG0500 SAM-dependent methyltransferases. (263 aa)
rumA23S rRNA m(5)U1939 methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. (446 aa)
DSC_11740N-6 DNA methylase; COG0286 Type I restriction-modification system methyltransferase subunit. (505 aa)
DSC_11750N-6 DNA methylase; COG0286 Type I restriction-modification system methyltransferase subunit. (507 aa)
DSC_11755COG0286 Type I restriction-modification system methyltransferase subunit. (596 aa)
DSC_12015Hypothetical protein; COG0500 SAM-dependent methyltransferases. (212 aa)
rlmL23S rRNA m(2)G2445 methyltransferase; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family. (713 aa)
prmCN5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily. (298 aa)
DSC_13740COG2518 Protein-L-isoaspartate carboxylmethyltransferase. (218 aa)
prmARibosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family. (307 aa)
DSC_14960Ribosomal RNA small subunit methyltransferase C; COG2813 16S RNA G1207 methylase RsmC; Belongs to the methyltransferase superfamily. (365 aa)
DSC_15155Hypothetical protein; COG2521 Predicted archaeal methyltransferase. (316 aa)
DSC_15190Type 12 methyltransferase; Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM). (236 aa)
DSC_15455Hypothetical protein; COG1002 Type II restriction enzyme, methylase subunits. (1131 aa)
Your Current Organism:
Pseudoxanthomonas spadix
NCBI taxonomy Id: 1045855
Other names: P. spadix BD-a59, Pseudoxanthomonas spadix BD-a59, Pseudoxanthomonas spadix str. BD-a59, Pseudoxanthomonas spadix strain BD-a59
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