(13 nodes) Carbohydrate kinase activity, and Mannose-6-phosphate isomerase network (Verticillium nonalfalfae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D7B24_004646	Uncharacterized protein. (707 aa)
	FBP1	Fructose-1,6-bisphosphatase; Belongs to the FBPase class 1 family. (345 aa)
	D7B24_002353	6PF2K domain-containing protein. (572 aa)
	GLK1	Phosphotransferase. (553 aa)
	D7B24_008241	Uncharacterized protein; Belongs to the mannose-6-phosphate isomerase type 1 family. (406 aa)
	D7B24_007708	ATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. (784 aa)
	HXK1	Phosphotransferase. (492 aa)
	PMI1	Mannose-6-phosphate isomerase. (453 aa)
	PGI1	Glucose-6-phosphate isomerase; Belongs to the GPI family. (553 aa)
	D7B24_009246	Uncharacterized protein. (396 aa)
	D7B24_000295	Phosphotransferase. (567 aa)
	FBP26	Fructose-2,6-bisphosphatase. (443 aa)
	D7B24_003465	Phosphotransferase. (553 aa)

Your Current Organism:

Verticillium nonalfalfae

NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7B24_000295	D7B24_002353	A0A3M9YKL6	A0A3M9XZL5	Phosphotransferase.	6PF2K domain-containing protein.	0.936
D7B24_000295	D7B24_003465	A0A3M9YKL6	A0A3M9YM58	Phosphotransferase.	Phosphotransferase.	0.936
D7B24_000295	D7B24_004646	A0A3M9YKL6	A0A3M9XY65	Phosphotransferase.	Uncharacterized protein.	0.938
D7B24_000295	D7B24_007708	A0A3M9YKL6	A0A3M9Y6K0	Phosphotransferase.	ATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.	0.956
D7B24_000295	D7B24_008241	A0A3M9YKL6	A0A3M9Y6B9	Phosphotransferase.	Uncharacterized protein; Belongs to the mannose-6-phosphate isomerase type 1 family.	0.935
D7B24_000295	D7B24_009246	A0A3M9YKL6	A0A3M9YIN5	Phosphotransferase.	Uncharacterized protein.	0.936
D7B24_000295	FBP1	A0A3M9YKL6	A0A3M9XYU8	Phosphotransferase.	Fructose-1,6-bisphosphatase; Belongs to the FBPase class 1 family.	0.940
D7B24_000295	FBP26	A0A3M9YKL6	A0A3M9YLB9	Phosphotransferase.	Fructose-2,6-bisphosphatase.	0.940
D7B24_000295	GLK1	A0A3M9YKL6	A0A3M9Y1A8	Phosphotransferase.	Phosphotransferase.	0.839
D7B24_000295	HXK1	A0A3M9YKL6	A0A3M9Y721	Phosphotransferase.	Phosphotransferase.	0.930
D7B24_000295	PGI1	A0A3M9YKL6	A0A3M9YI19	Phosphotransferase.	Glucose-6-phosphate isomerase; Belongs to the GPI family.	0.960
D7B24_000295	PMI1	A0A3M9YKL6	A0A3M9YAG2	Phosphotransferase.	Mannose-6-phosphate isomerase.	0.936
D7B24_002353	D7B24_000295	A0A3M9XZL5	A0A3M9YKL6	6PF2K domain-containing protein.	Phosphotransferase.	0.936
D7B24_002353	D7B24_003465	A0A3M9XZL5	A0A3M9YM58	6PF2K domain-containing protein.	Phosphotransferase.	0.935
D7B24_002353	D7B24_004646	A0A3M9XZL5	A0A3M9XY65	6PF2K domain-containing protein.	Uncharacterized protein.	0.684
D7B24_002353	D7B24_007708	A0A3M9XZL5	A0A3M9Y6K0	6PF2K domain-containing protein.	ATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.	0.950
D7B24_002353	D7B24_008241	A0A3M9XZL5	A0A3M9Y6B9	6PF2K domain-containing protein.	Uncharacterized protein; Belongs to the mannose-6-phosphate isomerase type 1 family.	0.928
D7B24_002353	D7B24_009246	A0A3M9XZL5	A0A3M9YIN5	6PF2K domain-containing protein.	Uncharacterized protein.	0.935
D7B24_002353	FBP1	A0A3M9XZL5	A0A3M9XYU8	6PF2K domain-containing protein.	Fructose-1,6-bisphosphatase; Belongs to the FBPase class 1 family.	0.938
D7B24_002353	FBP26	A0A3M9XZL5	A0A3M9YLB9	6PF2K domain-containing protein.	Fructose-2,6-bisphosphatase.	0.985