69 items (Verticillium nonalfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NIC96	Nuclear pore complex subunit. (1179 aa)
	D7B24_004273	Uncharacterized protein. (381 aa)
	D7B24_003720	Uncharacterized protein. (323 aa)
	D7B24_002860	Uncharacterized protein. (729 aa)
	SEC13	GTPase-activating protein S13; Belongs to the WD repeat SEC13 family. (356 aa)
	D7B24_002638	Protein arginine methyltransferase NDUFAF7; Arginine methyltransferase involved in the assembly or stability of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I). (69 aa)
	D7B24_002234	Uncharacterized protein. (420 aa)
	D7B24_002104	Uncharacterized protein. (198 aa)
	D7B24_002297	Uncharacterized protein. (1396 aa)
	D7B24_003858	Protein arginine methyltransferase NDUFAF7; Arginine methyltransferase involved in the assembly or stability of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I). (434 aa)
	D7B24_001642	Uncharacterized protein. (1665 aa)
	D7B24_001181	Peptidase S59 domain-containing protein. (1960 aa)
	D7B24_002804	Uncharacterized protein. (498 aa)
	D7B24_001534	RanBD1 domain-containing protein. (1256 aa)
	DBP5	RNA helicase required for poly(A+) mRNA export. (485 aa)
	IPO5	Importin-5. (1096 aa)
	D7B24_002002	Uncharacterized protein. (849 aa)
	CSE1L	Exportin-2. (958 aa)
	D7B24_002293	Uncharacterized protein. (414 aa)
	D7B24_002231	Uncharacterized protein. (604 aa)
	D7B24_002032	Uncharacterized protein. (504 aa)
	D7B24_000574	Uncharacterized protein. (1201 aa)
	D7B24_009451	Uncharacterized protein. (223 aa)
	D7B24_001235	Uncharacterized protein. (1014 aa)
	D7B24_001587	Importin N-terminal domain-containing protein. (1009 aa)
	D7B24_009554	Uncharacterized protein. (438 aa)
	D7B24_009346	Fungal_trans domain-containing protein. (1460 aa)
	D7B24_008974	TPR_MLP1_2 domain-containing protein. (2093 aa)
	D7B24_009095	Uncharacterized protein. (548 aa)
	D7B24_009383	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (855 aa)
	D7B24_009548	Importin N-terminal domain-containing protein. (1077 aa)
	D7B24_008867	Uncharacterized protein. (546 aa)
	D7B24_008513	Uncharacterized protein. (1388 aa)
	GSP1	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family. (218 aa)
	D7B24_008361	Uncharacterized protein. (7576 aa)
	XPO1	Exportin-1. (1078 aa)
	D7B24_007122	Uncharacterized protein. (364 aa)
	D7B24_007852	Uncharacterized protein. (487 aa)
	D7B24_007896	Uncharacterized protein. (135 aa)
	GLE2	RNA export factor gle2. (358 aa)
	D7B24_005768	Uncharacterized protein. (871 aa)
	D7B24_005618	WD_REPEATS_REGION domain-containing protein. (403 aa)
	D7B24_005385	Uncharacterized protein. (655 aa)
	SEH1	Epoxide hydrolase, soluble (SEH); Belongs to the WD repeat SEC13 family. (438 aa)
	LOS1	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family. (1011 aa)
	D7B24_005730	Uncharacterized protein. (1797 aa)
	D7B24_004674	Uncharacterized protein. (1174 aa)
	D7B24_004153	PA14 domain-containing protein. (212 aa)
	TNPO1	Transportin-1. (942 aa)
	D7B24_004675	RanBD1 domain-containing protein. (491 aa)
	D7B24_003785	Nup188_C domain-containing protein. (1826 aa)
	KAP95	Karyopherin beta. (876 aa)
	D7B24_003258	PA14 domain-containing protein. (342 aa)
	D7B24_001870	Uncharacterized protein. (852 aa)
	YRB1	Ran GTPase-binding protein yrb1. (257 aa)
	D7B24_003279	Uncharacterized protein. (424 aa)
	D7B24_001862	Uncharacterized protein. (598 aa)
	D7B24_000214	Uncharacterized protein. (805 aa)
	D7B24_008688	Uncharacterized protein. (671 aa)
	D7B24_001119	Uncharacterized protein. (155 aa)
	D7B24_008125	ELYS domain-containing protein. (303 aa)
	D7B24_008155	H15 domain-containing protein. (213 aa)
	D7B24_005906	NUP214 domain-containing protein. (1606 aa)
	D7B24_008662	Uncharacterized protein. (286 aa)
	D7B24_004981	Importin N-terminal domain-containing protein. (1052 aa)
	D7B24_000695	Nup54 domain-containing protein. (356 aa)
	D7B24_008657	Uncharacterized protein. (489 aa)
	D7B24_000086	Uncharacterized protein. (827 aa)
	D7B24_009211	Uncharacterized protein. (476 aa)

Your Current Organism:

Verticillium nonalfalfae

NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSE1L	D7B24_001534	A0A3M9Y1V8	A0A3M9Y0Q2	Exportin-2.	RanBD1 domain-containing protein.	0.820
CSE1L	D7B24_001870	A0A3M9Y1V8	A0A3M9YGI5	Exportin-2.	Uncharacterized protein.	0.553
CSE1L	D7B24_002297	A0A3M9Y1V8	A0A3M9XYS3	Exportin-2.	Uncharacterized protein.	0.430
CSE1L	D7B24_004675	A0A3M9Y1V8	A0A3M9YF52	Exportin-2.	RanBD1 domain-containing protein.	0.449
CSE1L	D7B24_008867	A0A3M9Y1V8	A0A3M9Y4M8	Exportin-2.	Uncharacterized protein.	0.441
CSE1L	D7B24_009548	A0A3M9Y1V8	A0A3M9Y4E8	Exportin-2.	Importin N-terminal domain-containing protein.	0.589
CSE1L	GSP1	A0A3M9Y1V8	A0A3M9Y6P3	Exportin-2.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.914
CSE1L	IPO5	A0A3M9Y1V8	A0A3M9Y123	Exportin-2.	Importin-5.	0.607
CSE1L	KAP95	A0A3M9Y1V8	A0A3M9YFY4	Exportin-2.	Karyopherin beta.	0.688
CSE1L	LOS1	A0A3M9Y1V8	A0A3M9YDH5	Exportin-2.	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family.	0.586
CSE1L	TNPO1	A0A3M9Y1V8	A0A3M9YEM7	Exportin-2.	Transportin-1.	0.499
CSE1L	XPO1	A0A3M9Y1V8	A0A3M9Y788	Exportin-2.	Exportin-1.	0.772
CSE1L	YRB1	A0A3M9Y1V8	A0A3M9YH35	Exportin-2.	Ran GTPase-binding protein yrb1.	0.553
D7B24_000086	D7B24_001534	A0A3M9YKW2	A0A3M9Y0Q2	Uncharacterized protein.	RanBD1 domain-containing protein.	0.718
D7B24_000086	D7B24_001642	A0A3M9YKW2	A0A3M9XZ87	Uncharacterized protein.	Uncharacterized protein.	0.458
D7B24_000086	D7B24_002297	A0A3M9YKW2	A0A3M9XYS3	Uncharacterized protein.	Uncharacterized protein.	0.479
D7B24_000086	D7B24_008125	A0A3M9YKW2	A0A3M9YIN9	Uncharacterized protein.	ELYS domain-containing protein.	0.413
D7B24_000086	D7B24_008513	A0A3M9YKW2	A0A3M9Y5M6	Uncharacterized protein.	Uncharacterized protein.	0.548
D7B24_000086	D7B24_009383	A0A3M9YKW2	A0A3M9Y3W9	Uncharacterized protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.556
D7B24_000086	NIC96	A0A3M9YKW2	A0A3M9XUR9	Uncharacterized protein.	Nuclear pore complex subunit.	0.473