32 items (Verticillium nonalfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NIC96	Nuclear pore complex subunit. (1179 aa)
	D7B24_003720	Uncharacterized protein. (323 aa)
	SEC13	GTPase-activating protein S13; Belongs to the WD repeat SEC13 family. (356 aa)
	D7B24_002234	Uncharacterized protein. (420 aa)
	D7B24_002297	Uncharacterized protein. (1396 aa)
	D7B24_001642	Uncharacterized protein. (1665 aa)
	D7B24_001181	Peptidase S59 domain-containing protein. (1960 aa)
	D7B24_001534	RanBD1 domain-containing protein. (1256 aa)
	DBP5	RNA helicase required for poly(A+) mRNA export. (485 aa)
	D7B24_002002	Uncharacterized protein. (849 aa)
	D7B24_002032	Uncharacterized protein. (504 aa)
	D7B24_000574	Uncharacterized protein. (1201 aa)
	D7B24_001235	Uncharacterized protein. (1014 aa)
	D7B24_008974	TPR_MLP1_2 domain-containing protein. (2093 aa)
	D7B24_009095	Uncharacterized protein. (548 aa)
	D7B24_009383	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (855 aa)
	D7B24_008513	Uncharacterized protein. (1388 aa)
	GSP1	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family. (218 aa)
	D7B24_008361	Uncharacterized protein. (7576 aa)
	XPO1	Exportin-1. (1078 aa)
	GLE2	RNA export factor gle2. (358 aa)
	SEH1	Epoxide hydrolase, soluble (SEH); Belongs to the WD repeat SEC13 family. (438 aa)
	D7B24_003785	Nup188_C domain-containing protein. (1826 aa)
	D7B24_001870	Uncharacterized protein. (852 aa)
	YRB1	Ran GTPase-binding protein yrb1. (257 aa)
	D7B24_003279	Uncharacterized protein. (424 aa)
	D7B24_008688	Uncharacterized protein. (671 aa)
	D7B24_008125	ELYS domain-containing protein. (303 aa)
	D7B24_005906	NUP214 domain-containing protein. (1606 aa)
	D7B24_008662	Uncharacterized protein. (286 aa)
	D7B24_000695	Nup54 domain-containing protein. (356 aa)
	D7B24_008657	Uncharacterized protein. (489 aa)

Your Current Organism:

Verticillium nonalfalfae

NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7B24_000574	D7B24_000695	A0A3M9Y2J6	A0A3M9YK93	Uncharacterized protein.	Nup54 domain-containing protein.	0.906
D7B24_000574	D7B24_001181	A0A3M9Y2J6	A0A3M9Y092	Uncharacterized protein.	Peptidase S59 domain-containing protein.	0.988
D7B24_000574	D7B24_001642	A0A3M9Y2J6	A0A3M9XZ87	Uncharacterized protein.	Uncharacterized protein.	0.857
D7B24_000574	D7B24_002297	A0A3M9Y2J6	A0A3M9XYS3	Uncharacterized protein.	Uncharacterized protein.	0.810
D7B24_000574	D7B24_003785	A0A3M9Y2J6	A0A3M9YFL7	Uncharacterized protein.	Nup188_C domain-containing protein.	0.946
D7B24_000574	D7B24_005906	A0A3M9Y2J6	A0A3M9YJL2	Uncharacterized protein.	NUP214 domain-containing protein.	0.893
D7B24_000574	D7B24_008513	A0A3M9Y2J6	A0A3M9Y5M6	Uncharacterized protein.	Uncharacterized protein.	0.988
D7B24_000574	D7B24_008974	A0A3M9Y2J6	A0A3M9Y3U3	Uncharacterized protein.	TPR_MLP1_2 domain-containing protein.	0.486
D7B24_000574	D7B24_009095	A0A3M9Y2J6	A0A3M9Y3W8	Uncharacterized protein.	Uncharacterized protein.	0.523
D7B24_000574	D7B24_009383	A0A3M9Y2J6	A0A3M9Y3W9	Uncharacterized protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.985
D7B24_000574	NIC96	A0A3M9Y2J6	A0A3M9XUR9	Uncharacterized protein.	Nuclear pore complex subunit.	0.866
D7B24_000574	SEC13	A0A3M9Y2J6	A0A3M9XY10	Uncharacterized protein.	GTPase-activating protein S13; Belongs to the WD repeat SEC13 family.	0.982
D7B24_000574	SEH1	A0A3M9Y2J6	A0A3M9YD89	Uncharacterized protein.	Epoxide hydrolase, soluble (SEH); Belongs to the WD repeat SEC13 family.	0.412
D7B24_000695	D7B24_000574	A0A3M9YK93	A0A3M9Y2J6	Nup54 domain-containing protein.	Uncharacterized protein.	0.906
D7B24_000695	D7B24_001181	A0A3M9YK93	A0A3M9Y092	Nup54 domain-containing protein.	Peptidase S59 domain-containing protein.	0.988
D7B24_000695	D7B24_001235	A0A3M9YK93	A0A3M9Y376	Nup54 domain-containing protein.	Uncharacterized protein.	0.921
D7B24_000695	D7B24_001534	A0A3M9YK93	A0A3M9Y0Q2	Nup54 domain-containing protein.	RanBD1 domain-containing protein.	0.999
D7B24_000695	D7B24_001642	A0A3M9YK93	A0A3M9XZ87	Nup54 domain-containing protein.	Uncharacterized protein.	0.995
D7B24_000695	D7B24_001870	A0A3M9YK93	A0A3M9YGI5	Nup54 domain-containing protein.	Uncharacterized protein.	0.913
D7B24_000695	D7B24_002002	A0A3M9YK93	A0A3M9Y1R7	Nup54 domain-containing protein.	Uncharacterized protein.	0.696