20 items (Verticillium nonalfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NIC96	Nuclear pore complex subunit. (1179 aa)
	D7B24_003720	Uncharacterized protein. (323 aa)
	SEC13	GTPase-activating protein S13; Belongs to the WD repeat SEC13 family. (356 aa)
	D7B24_002297	Uncharacterized protein. (1396 aa)
	D7B24_001642	Uncharacterized protein. (1665 aa)
	D7B24_001181	Peptidase S59 domain-containing protein. (1960 aa)
	DBP5	RNA helicase required for poly(A+) mRNA export. (485 aa)
	D7B24_001235	Uncharacterized protein. (1014 aa)
	D7B24_008974	TPR_MLP1_2 domain-containing protein. (2093 aa)
	D7B24_009095	Uncharacterized protein. (548 aa)
	D7B24_009383	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (855 aa)
	D7B24_008513	Uncharacterized protein. (1388 aa)
	D7B24_008361	Uncharacterized protein. (7576 aa)
	GLE2	RNA export factor gle2. (358 aa)
	SEH1	Epoxide hydrolase, soluble (SEH); Belongs to the WD repeat SEC13 family. (438 aa)
	D7B24_003279	Uncharacterized protein. (424 aa)
	D7B24_008125	ELYS domain-containing protein. (303 aa)
	D7B24_005906	NUP214 domain-containing protein. (1606 aa)
	D7B24_000695	Nup54 domain-containing protein. (356 aa)
	D7B24_008657	Uncharacterized protein. (489 aa)

Your Current Organism:

Verticillium nonalfalfae

NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7B24_000695	D7B24_001181	A0A3M9YK93	A0A3M9Y092	Nup54 domain-containing protein.	Peptidase S59 domain-containing protein.	0.988
D7B24_000695	D7B24_001235	A0A3M9YK93	A0A3M9Y376	Nup54 domain-containing protein.	Uncharacterized protein.	0.921
D7B24_000695	D7B24_001642	A0A3M9YK93	A0A3M9XZ87	Nup54 domain-containing protein.	Uncharacterized protein.	0.995
D7B24_000695	D7B24_002297	A0A3M9YK93	A0A3M9XYS3	Nup54 domain-containing protein.	Uncharacterized protein.	0.994
D7B24_000695	D7B24_003279	A0A3M9YK93	A0A3M9YHC4	Nup54 domain-containing protein.	Uncharacterized protein.	0.658
D7B24_000695	D7B24_003720	A0A3M9YK93	A0A3M9XWK2	Nup54 domain-containing protein.	Uncharacterized protein.	0.962
D7B24_000695	D7B24_005906	A0A3M9YK93	A0A3M9YJL2	Nup54 domain-containing protein.	NUP214 domain-containing protein.	0.975
D7B24_000695	D7B24_008125	A0A3M9YK93	A0A3M9YIN9	Nup54 domain-containing protein.	ELYS domain-containing protein.	0.748
D7B24_000695	D7B24_008361	A0A3M9YK93	A0A3M9Y759	Nup54 domain-containing protein.	Uncharacterized protein.	0.921
D7B24_000695	D7B24_008513	A0A3M9YK93	A0A3M9Y5M6	Nup54 domain-containing protein.	Uncharacterized protein.	0.983
D7B24_000695	D7B24_008657	A0A3M9YK93	A0A3M9YKD3	Nup54 domain-containing protein.	Uncharacterized protein.	0.921
D7B24_000695	D7B24_008974	A0A3M9YK93	A0A3M9Y3U3	Nup54 domain-containing protein.	TPR_MLP1_2 domain-containing protein.	0.825
D7B24_000695	D7B24_009095	A0A3M9YK93	A0A3M9Y3W8	Nup54 domain-containing protein.	Uncharacterized protein.	0.950
D7B24_000695	D7B24_009383	A0A3M9YK93	A0A3M9Y3W9	Nup54 domain-containing protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.984
D7B24_000695	GLE2	A0A3M9YK93	A0A3M9YA93	Nup54 domain-containing protein.	RNA export factor gle2.	0.885
D7B24_000695	NIC96	A0A3M9YK93	A0A3M9XUR9	Nup54 domain-containing protein.	Nuclear pore complex subunit.	0.995
D7B24_000695	SEC13	A0A3M9YK93	A0A3M9XY10	Nup54 domain-containing protein.	GTPase-activating protein S13; Belongs to the WD repeat SEC13 family.	0.975
D7B24_000695	SEH1	A0A3M9YK93	A0A3M9YD89	Nup54 domain-containing protein.	Epoxide hydrolase, soluble (SEH); Belongs to the WD repeat SEC13 family.	0.978
D7B24_001181	D7B24_000695	A0A3M9Y092	A0A3M9YK93	Peptidase S59 domain-containing protein.	Nup54 domain-containing protein.	0.988
D7B24_001181	D7B24_001642	A0A3M9Y092	A0A3M9XZ87	Peptidase S59 domain-containing protein.	Uncharacterized protein.	0.976