22 items (Verticillium nonalfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D7B24_003648	Uncharacterized protein. (781 aa)
	D7B24_003649	Uncharacterized protein. (900 aa)
	D7B24_002284	Zn(2)-C6 fungal-type domain-containing protein. (709 aa)
	D7B24_008755	Uncharacterized protein. (744 aa)
	D7B24_007939	Cyclin N-terminal domain-containing protein. (310 aa)
	D7B24_007807	Uncharacterized protein. (457 aa)
	D7B24_006913	Uncharacterized protein. (264 aa)
	D7B24_007693	Uncharacterized protein. (223 aa)
	D7B24_007241	Uncharacterized protein. (558 aa)
	D7B24_007769	Uncharacterized protein. (847 aa)
	D7B24_005777	Uncharacterized protein. (770 aa)
	D7B24_005570	Uncharacterized protein. (686 aa)
	D7B24_005134	Uncharacterized protein. (242 aa)
	D7B24_004896	Uncharacterized protein. (589 aa)
	D7B24_005868	Uncharacterized protein. (485 aa)
	D7B24_004731	DUF2415 domain-containing protein. (773 aa)
	D7B24_003187	Zn(2)-C6 fungal-type domain-containing protein. (488 aa)
	D7B24_000684	Uncharacterized protein. (791 aa)
	D7B24_009171	Uncharacterized protein. (416 aa)
	D7B24_005958	Zn(2)-C6 fungal-type domain-containing protein. (782 aa)
	D7B24_005945	Uncharacterized protein. (687 aa)
	D7B24_000031	Uncharacterized protein. (870 aa)

Your Current Organism:

Verticillium nonalfalfae

NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7B24_000031	D7B24_004896	A0A3M9YL62	A0A3M9YCK0	Uncharacterized protein.	Uncharacterized protein.	0.402
D7B24_000031	D7B24_005868	A0A3M9YL62	A0A3M9YEJ2	Uncharacterized protein.	Uncharacterized protein.	0.427
D7B24_000031	D7B24_005945	A0A3M9YL62	A0A3M9YK78	Uncharacterized protein.	Uncharacterized protein.	0.456
D7B24_000031	D7B24_007693	A0A3M9YL62	A0A3M9Y9B3	Uncharacterized protein.	Uncharacterized protein.	0.464
D7B24_000031	D7B24_007769	A0A3M9YL62	A0A3M9YAJ2	Uncharacterized protein.	Uncharacterized protein.	0.500
D7B24_000031	D7B24_008755	A0A3M9YL62	A0A3M9Y569	Uncharacterized protein.	Uncharacterized protein.	0.465
D7B24_002284	D7B24_007241	A0A3M9XZG1	A0A3M9Y9F1	Zn(2)-C6 fungal-type domain-containing protein.	Uncharacterized protein.	0.424
D7B24_003187	D7B24_005868	A0A3M9YFA9	A0A3M9YEJ2	Zn(2)-C6 fungal-type domain-containing protein.	Uncharacterized protein.	0.436
D7B24_003187	D7B24_005958	A0A3M9YFA9	A0A3M9YJQ6	Zn(2)-C6 fungal-type domain-containing protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.411
D7B24_003648	D7B24_005777	A0A3M9XW28	A0A3M9YAT6	Uncharacterized protein.	Uncharacterized protein.	0.499
D7B24_003648	D7B24_007807	A0A3M9XW28	A0A3M9Y935	Uncharacterized protein.	Uncharacterized protein.	0.408
D7B24_004896	D7B24_000031	A0A3M9YCK0	A0A3M9YL62	Uncharacterized protein.	Uncharacterized protein.	0.402
D7B24_004896	D7B24_006913	A0A3M9YCK0	A0A3M9Y941	Uncharacterized protein.	Uncharacterized protein.	0.455
D7B24_005570	D7B24_007807	A0A3M9YB83	A0A3M9Y935	Uncharacterized protein.	Uncharacterized protein.	0.410
D7B24_005570	D7B24_009171	A0A3M9YB83	A0A3M9YJK9	Uncharacterized protein.	Uncharacterized protein.	0.476
D7B24_005777	D7B24_003648	A0A3M9YAT6	A0A3M9XW28	Uncharacterized protein.	Uncharacterized protein.	0.499
D7B24_005868	D7B24_000031	A0A3M9YEJ2	A0A3M9YL62	Uncharacterized protein.	Uncharacterized protein.	0.427
D7B24_005868	D7B24_003187	A0A3M9YEJ2	A0A3M9YFA9	Uncharacterized protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.436
D7B24_005868	D7B24_007807	A0A3M9YEJ2	A0A3M9Y935	Uncharacterized protein.	Uncharacterized protein.	0.497
D7B24_005945	D7B24_000031	A0A3M9YK78	A0A3M9YL62	Uncharacterized protein.	Uncharacterized protein.	0.456