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GNL3 GNL3 D7B24_004269 D7B24_004269 ENP1 ENP1 D7B24_004397 D7B24_004397 D7B24_003851 D7B24_003851 SPB1 SPB1 D7B24_002894 D7B24_002894 UTP11 UTP11 PAK1IP1 PAK1IP1 D7B24_003315 D7B24_003315 ROK1 ROK1 ERB1 ERB1 D7B24_002287 D7B24_002287 NOP2 NOP2 D7B24_001770 D7B24_001770 GTPBP4 GTPBP4 MRTO4 MRTO4 D7B24_001034 D7B24_001034 NOP7 NOP7 D7B24_002945 D7B24_002945 RRP5 RRP5 EMG1 EMG1 D7B24_000800 D7B24_000800 D7B24_002053 D7B24_002053 YTM1 YTM1 IMP3 IMP3 RPS7 RPS7 KRE33 KRE33 D7B24_009589 D7B24_009589 D7B24_009389 D7B24_009389 D7B24_009062 D7B24_009062 NOL6 NOL6 UTP5 UTP5 D7B24_008870 D7B24_008870 MAK5 MAK5 UTP13 UTP13 UTP10 UTP10 KRR1 KRR1 MRD1 MRD1 D7B24_009077 D7B24_009077 NOG2 NOG2 NOP56 NOP56 NOP4 NOP4 NOP14 NOP14 LTV1 LTV1 DBP7 DBP7 D7B24_008809 D7B24_008809 D7B24_007784 D7B24_007784 BFR2 BFR2 RIOK2 RIOK2 NOP16 NOP16 UTP4 UTP4 UTP7 UTP7 NOC2 NOC2 WDR36 WDR36 ECM16 ECM16 LOC1 LOC1 UTP25 UTP25 D7B24_007099 D7B24_007099 DBP8 DBP8 D7B24_007383 D7B24_007383 D7B24_007884 D7B24_007884 RRP12 RRP12 PUF6 PUF6 DBP10 DBP10 NOP1 NOP1 DIM1 DIM1 NIP7 NIP7 D7B24_007230 D7B24_007230 D7B24_005268 D7B24_005268 SNU13 SNU13 D7B24_005854 D7B24_005854 D7B24_005226 D7B24_005226 SPB4 SPB4 D7B24_005619 D7B24_005619 NOP58 NOP58 RRP3 RRP3 D7B24_004360 D7B24_004360 SOF1 SOF1 IMP4 IMP4 RPS6 RPS6 NOP9 NOP9 D7B24_005317 D7B24_005317 NOB1 NOB1 D7B24_004177 D7B24_004177 UTP6 UTP6 D7B24_002121 D7B24_002121 UTP20 UTP20 BMS1 BMS1 D7B24_001452 D7B24_001452 HAS1 HAS1 D7B24_006711 D7B24_006711 D7B24_005912 D7B24_005912 RPS9 RPS9 RPF2 RPF2 WDR3 WDR3 D7B24_003426 D7B24_003426 D7B24_005953 D7B24_005953 RRP9 RRP9 NOP12 NOP12 D7B24_005928 D7B24_005928 NSA2 NSA2 D7B24_005981 D7B24_005981 D7B24_006002 D7B24_006002 D7B24_003493 D7B24_003493 D7B24_000063 D7B24_000063 PNO1 PNO1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
GNL3Guanine nucleotide-binding protein-like 3. (545 aa)
D7B24_004269Brix domain-containing protein. (420 aa)
ENP1SnoRNA-binding rRNA-processing protein. (483 aa)
D7B24_004397Uncharacterized protein. (269 aa)
D7B24_003851Uncharacterized protein. (604 aa)
SPB1AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (862 aa)
D7B24_002894Uncharacterized protein; Belongs to the DEAD box helicase family. (717 aa)
UTP11Small subunit (SSU) processome component. (269 aa)
PAK1IP1P21-activated protein kinase-interacting protein 1-like protein. (494 aa)
D7B24_003315Uncharacterized protein. (234 aa)
ROK1RNA-dependent ATPase rok1. (768 aa)
ERB1Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (766 aa)
D7B24_002287WD_REPEATS_REGION domain-containing protein. (905 aa)
NOP2rRNA (Cytosine-C5-)-methyltransferase nop2; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (766 aa)
D7B24_001770RTC domain-containing protein. (414 aa)
GTPBP4Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (658 aa)
MRTO4Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (247 aa)
D7B24_001034Uncharacterized protein. (221 aa)
NOP7Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (665 aa)
D7B24_002945Uncharacterized protein. (281 aa)
RRP5rRNA bioproteinsis protein rrp5. (1809 aa)
EMG118S rRNA pseudouridine methyltransferase. (276 aa)
D7B24_000800Sas10 domain-containing protein. (668 aa)
D7B24_002053Uncharacterized protein. (383 aa)
YTM1Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (483 aa)
IMP3Small subunit (SSU) processome component. (183 aa)
RPS740S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (201 aa)
KRE33RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1065 aa)
D7B24_009589Uncharacterized protein. (876 aa)
D7B24_009389CBF domain-containing protein. (1016 aa)
D7B24_009062WD_REPEATS_REGION domain-containing protein. (968 aa)
NOL6U3 small nucleolar RNA-associated protein 22. (1102 aa)
UTP5Small subunit (SSU) processome component. (433 aa)
D7B24_008870Fcf2 domain-containing protein. (197 aa)
MAK5ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. (787 aa)
UTP13U3 small nucleolar RNA-associated protein 13. (906 aa)
UTP10SnoRNA-binding rRNA-processing protein utp10. (1809 aa)
KRR1KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (319 aa)
MRD1Multiple RNA-binding domain-containing protein 1. (866 aa)
D7B24_009077Uncharacterized protein. (200 aa)
NOG2Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (609 aa)
NOP56snoRNP complex protein nop56. (510 aa)
NOP4RNA recognition motif-containing protein. (785 aa)
NOP14Nucleolar complex protein 14. (915 aa)
LTV1Protein ltv1. (428 aa)
DBP7ATP-dependent RNA helicase dbp7; Belongs to the DEAD box helicase family. (770 aa)
D7B24_008809Uncharacterized protein. (815 aa)
D7B24_007784Bms1-type G domain-containing protein. (820 aa)
BFR2rRNA-processing protein bfr2. (594 aa)
RIOK2Serine/threonine-protein kinase RIO2. (419 aa)
NOP16Nucleolar protein 16. (231 aa)
UTP4U3 small nucleolar RNA-associated protein. (911 aa)
UTP7Small subunit (SSU) processome component. (553 aa)
NOC2Nucleolar Complex 2 protein. (805 aa)
WDR36WD repeat-containing protein 36. (1042 aa)
ECM16Putative ATP-dependent RNA helicase DHR1. (1197 aa)
LOC160S ribosomal subunit assembly/export protein. (202 aa)
UTP25U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (773 aa)
D7B24_007099Ribosomal_L28e domain-containing protein. (321 aa)
DBP8Putative RNA helicase; Belongs to the DEAD box helicase family. (556 aa)
D7B24_007383zf-LYAR domain-containing protein. (387 aa)
D7B24_007884Uncharacterized protein. (916 aa)
RRP12Pre-rRNA processing protein. (1321 aa)
PUF6Pumilio domain member 6. (708 aa)
DBP10ATP-dependent RNA helicase DBP10. (902 aa)
NOP1Small subunit processome complex component. (325 aa)
DIM1rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (370 aa)
NIP760S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (185 aa)
D7B24_007230Uncharacterized protein. (449 aa)
D7B24_005268Uncharacterized protein; Belongs to the DEAD box helicase family. (580 aa)
SNU13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (125 aa)
D7B24_005854Uncharacterized protein. (694 aa)
D7B24_005226Uncharacterized protein. (229 aa)
SPB4RNA helicase. (632 aa)
D7B24_005619Uncharacterized protein. (754 aa)
NOP58Nucleolar protein 58. (655 aa)
RRP3Ribosomal RNA processing protein; Belongs to the DEAD box helicase family. (487 aa)
D7B24_004360Uncharacterized protein. (339 aa)
SOF1rRNA-processing protein sof1. (448 aa)
IMP4SnoRNA-binding rRNA-processing protein imp4. (293 aa)
RPS640S ribosomal protein S6. (257 aa)
NOP9Nucleolar protein 9. (748 aa)
D7B24_005317Uncharacterized protein. (231 aa)
NOB1Nin1 binding protein. (472 aa)
D7B24_004177Brix domain-containing protein. (462 aa)
UTP6U3 snoRNP protein. (416 aa)
D7B24_002121RRM domain-containing protein. (386 aa)
UTP20U3 snoRNP protein. (2640 aa)
BMS1Glycoside hydrolase 2 (Mannanase, beta-galactosidase). (1159 aa)
D7B24_001452Uncharacterized protein. (1028 aa)
HAS1RNA helicase. (706 aa)
D7B24_006711Cytochrome b5 heme-binding domain-containing protein. (754 aa)
D7B24_005912CBF domain-containing protein. (546 aa)
RPS940S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (191 aa)
RPF2rRNA-binding ribosome biosynthesis protein rpf2. (317 aa)
WDR3Dip2/Utp12 protein. (1050 aa)
D7B24_003426Uncharacterized protein. (940 aa)
D7B24_005953rRNA-processing protein; Involved in nucleolar integrity and required for processing of the pre-rRNA for the 60S ribosome subunit. Belongs to the CGR1 family. (118 aa)
RRP9Pre-rRNA processing protein. (606 aa)
NOP12Nucleolar protein 12. (550 aa)
D7B24_005928Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (196 aa)
NSA2Ribosome bioproteinsis protein. (284 aa)
D7B24_005981Uncharacterized protein. (402 aa)
D7B24_006002WD_REPEATS_REGION domain-containing protein. (598 aa)
D7B24_003493WD_REPEATS_REGION domain-containing protein. (634 aa)
D7B24_000063WD_REPEATS_REGION domain-containing protein. (535 aa)
PNO1Pre-rRNA-processing protein pno1. (257 aa)
Your Current Organism:
Verticillium nonalfalfae
NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d
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