38 items (Verticillium nonalfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GNL3	Guanine nucleotide-binding protein-like 3. (545 aa)
	D7B24_004269	Brix domain-containing protein. (420 aa)
	D7B24_004397	Uncharacterized protein. (269 aa)
	D7B24_003851	Uncharacterized protein. (604 aa)
	SPB1	AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (862 aa)
	D7B24_002894	Uncharacterized protein; Belongs to the DEAD box helicase family. (717 aa)
	ERB1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (766 aa)
	NOP2	rRNA (Cytosine-C5-)-methyltransferase nop2; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (766 aa)
	GTPBP4	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (658 aa)
	MRTO4	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (247 aa)
	D7B24_001034	Uncharacterized protein. (221 aa)
	NOP7	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (665 aa)
	D7B24_002053	Uncharacterized protein. (383 aa)
	YTM1	Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (483 aa)
	D7B24_009389	CBF domain-containing protein. (1016 aa)
	MAK5	ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. (787 aa)
	NOG2	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (609 aa)
	NOP4	RNA recognition motif-containing protein. (785 aa)
	NOP16	Nucleolar protein 16. (231 aa)
	NOC2	Nucleolar Complex 2 protein. (805 aa)
	LOC1	60S ribosomal subunit assembly/export protein. (202 aa)
	D7B24_007099	Ribosomal_L28e domain-containing protein. (321 aa)
	D7B24_007884	Uncharacterized protein. (916 aa)
	PUF6	Pumilio domain member 6. (708 aa)
	NIP7	60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (185 aa)
	D7B24_007230	Uncharacterized protein. (449 aa)
	D7B24_005854	Uncharacterized protein. (694 aa)
	SPB4	RNA helicase. (632 aa)
	D7B24_004360	Uncharacterized protein. (339 aa)
	D7B24_004177	Brix domain-containing protein. (462 aa)
	D7B24_002121	RRM domain-containing protein. (386 aa)
	HAS1	RNA helicase. (706 aa)
	RPF2	rRNA-binding ribosome biosynthesis protein rpf2. (317 aa)
	D7B24_005953	rRNA-processing protein; Involved in nucleolar integrity and required for processing of the pre-rRNA for the 60S ribosome subunit. Belongs to the CGR1 family. (118 aa)
	NOP12	Nucleolar protein 12. (550 aa)
	D7B24_005928	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (196 aa)
	NSA2	Ribosome bioproteinsis protein. (284 aa)
	D7B24_000063	WD_REPEATS_REGION domain-containing protein. (535 aa)

Your Current Organism:

Verticillium nonalfalfae

NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7B24_000063	D7B24_001034	A0A3M9YQ44	A0A3M9Y0G8	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.429
D7B24_000063	D7B24_002053	A0A3M9YQ44	A0A3M9Y1L7	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.927
D7B24_000063	D7B24_002121	A0A3M9YQ44	A0A3M9YG17	WD_REPEATS_REGION domain-containing protein.	RRM domain-containing protein.	0.873
D7B24_000063	D7B24_002894	A0A3M9YQ44	A0A3M9XX02	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.474
D7B24_000063	D7B24_003851	A0A3M9YQ44	A0A3M9XWD8	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.552
D7B24_000063	D7B24_004177	A0A3M9YQ44	A0A3M9YFX0	WD_REPEATS_REGION domain-containing protein.	Brix domain-containing protein.	0.442
D7B24_000063	D7B24_004269	A0A3M9YQ44	A0A3M9XVS6	WD_REPEATS_REGION domain-containing protein.	Brix domain-containing protein.	0.787
D7B24_000063	D7B24_004360	A0A3M9YQ44	A0A3M9YEA1	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.619
D7B24_000063	D7B24_004397	A0A3M9YQ44	A0A3M9XW49	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.855
D7B24_000063	D7B24_005854	A0A3M9YQ44	A0A3M9YCK8	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.624
D7B24_000063	D7B24_005928	A0A3M9YQ44	A0A3M9YMG9	WD_REPEATS_REGION domain-containing protein.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.779
D7B24_000063	D7B24_007099	A0A3M9YQ44	A0A3M9Y9H6	WD_REPEATS_REGION domain-containing protein.	Ribosomal_L28e domain-containing protein.	0.794
D7B24_000063	D7B24_007230	A0A3M9YQ44	A0A3M9YBR6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.577
D7B24_000063	D7B24_007884	A0A3M9YQ44	A0A3M9YA85	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.934
D7B24_000063	D7B24_009389	A0A3M9YQ44	A0A3M9Y3K2	WD_REPEATS_REGION domain-containing protein.	CBF domain-containing protein.	0.870
D7B24_000063	ERB1	A0A3M9YQ44	A0A3M9XYB3	WD_REPEATS_REGION domain-containing protein.	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.863
D7B24_000063	GNL3	A0A3M9YQ44	A0A3M9XVR1	WD_REPEATS_REGION domain-containing protein.	Guanine nucleotide-binding protein-like 3.	0.886
D7B24_000063	GTPBP4	A0A3M9YQ44	A0A3M9XZZ7	WD_REPEATS_REGION domain-containing protein.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.921
D7B24_000063	HAS1	A0A3M9YQ44	A0A3M9YJ34	WD_REPEATS_REGION domain-containing protein.	RNA helicase.	0.843
D7B24_000063	MAK5	A0A3M9YQ44	A0A3M9Y485	WD_REPEATS_REGION domain-containing protein.	ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.	0.762