15 items (Verticillium nonalfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RRP5	rRNA bioproteinsis protein rrp5. (1809 aa)
	RPP0	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (313 aa)
	MDN1	AAA ATPase midasin. (4969 aa)
	RPF2	rRNA-binding ribosome biosynthesis protein rpf2. (317 aa)
	D7B24_000157	Uncharacterized protein. (710 aa)
	MRTO4	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (247 aa)
	NLE1	Notchless protein 1. (515 aa)
	RPL25	60S ribosomal protein L25. (157 aa)
	D7B24_007872	CP-type G domain-containing protein. (643 aa)
	D7B24_007884	Uncharacterized protein. (916 aa)
	RPL5	60S ribosomal protein L5. (299 aa)
	D7B24_007230	Uncharacterized protein. (449 aa)
	D7B24_004177	Brix domain-containing protein. (462 aa)
	D7B24_002679	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (202 aa)
	D7B24_000698	WD_REPEATS_REGION domain-containing protein. (500 aa)

Your Current Organism:

Verticillium nonalfalfae

NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7B24_000157	D7B24_002679	A0A3M9YMK8	A0A3M9YGW0	Uncharacterized protein.	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.	0.414
D7B24_000157	MRTO4	A0A3M9YMK8	A0A3M9Y008	Uncharacterized protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.666
D7B24_000157	NLE1	A0A3M9YMK8	A0A3M9XYN8	Uncharacterized protein.	Notchless protein 1.	0.892
D7B24_000157	RPF2	A0A3M9YMK8	A0A3M9YL32	Uncharacterized protein.	rRNA-binding ribosome biosynthesis protein rpf2.	0.434
D7B24_000157	RPL25	A0A3M9YMK8	A0A3M9Y324	Uncharacterized protein.	60S ribosomal protein L25.	0.581
D7B24_000157	RPL5	A0A3M9YMK8	A0A3M9YAH6	Uncharacterized protein.	60S ribosomal protein L5.	0.544
D7B24_000157	RRP5	A0A3M9YMK8	A0A3M9Y108	Uncharacterized protein.	rRNA bioproteinsis protein rrp5.	0.607
D7B24_000698	D7B24_007872	A0A3M9YIS2	A0A3M9Y8Z5	WD_REPEATS_REGION domain-containing protein.	CP-type G domain-containing protein.	0.523
D7B24_000698	MRTO4	A0A3M9YIS2	A0A3M9Y008	WD_REPEATS_REGION domain-containing protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.665
D7B24_000698	RPF2	A0A3M9YIS2	A0A3M9YL32	WD_REPEATS_REGION domain-containing protein.	rRNA-binding ribosome biosynthesis protein rpf2.	0.567
D7B24_000698	RPP0	A0A3M9YIS2	A0A3M9Y3H4	WD_REPEATS_REGION domain-containing protein.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.401
D7B24_002679	D7B24_000157	A0A3M9YGW0	A0A3M9YMK8	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.	Uncharacterized protein.	0.414
D7B24_002679	D7B24_004177	A0A3M9YGW0	A0A3M9YFX0	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.	Brix domain-containing protein.	0.475
D7B24_002679	D7B24_007230	A0A3M9YGW0	A0A3M9YBR6	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.	Uncharacterized protein.	0.864
D7B24_002679	D7B24_007872	A0A3M9YGW0	A0A3M9Y8Z5	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.	CP-type G domain-containing protein.	0.870
D7B24_002679	D7B24_007884	A0A3M9YGW0	A0A3M9YA85	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.	Uncharacterized protein.	0.876
D7B24_002679	MDN1	A0A3M9YGW0	A0A3M9Y5A3	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.	AAA ATPase midasin.	0.414
D7B24_002679	MRTO4	A0A3M9YGW0	A0A3M9Y008	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.980
D7B24_002679	NLE1	A0A3M9YGW0	A0A3M9XYN8	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.	Notchless protein 1.	0.478
D7B24_002679	RPF2	A0A3M9YGW0	A0A3M9YL32	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.	rRNA-binding ribosome biosynthesis protein rpf2.	0.762