15 items (Verticillium nonalfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D7B24_004768	Ribosomal_S7 domain-containing protein. (380 aa)
	D7B24_002287	WD_REPEATS_REGION domain-containing protein. (905 aa)
	RRP5	rRNA bioproteinsis protein rrp5. (1809 aa)
	RPS27	40S ribosomal protein S27. (238 aa)
	RPS14	Ribosomal protein S14, S11; Belongs to the universal ribosomal protein uS11 family. (151 aa)
	RPS28A_2	40S ribosomal protein S28. (68 aa)
	D7B24_009589	Uncharacterized protein. (876 aa)
	MRD1	Multiple RNA-binding domain-containing protein 1. (866 aa)
	D7B24_007281	Uncharacterized protein. (248 aa)
	RPS19	40S ribosomal protein S19. (152 aa)
	RPS5	Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (212 aa)
	RPS28A_1	40S ribosomal protein S28. (68 aa)
	RSM19	Mitochondrial ribosomal small subunit component; Belongs to the universal ribosomal protein uS19 family. (90 aa)
	RPS15	Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (203 aa)
	RPS0	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (288 aa)

Your Current Organism:

Verticillium nonalfalfae

NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7B24_002287	D7B24_004768	A0A3M9XZ13	A0A3M9YEW0	WD_REPEATS_REGION domain-containing protein.	Ribosomal_S7 domain-containing protein.	0.738
D7B24_002287	D7B24_007281	A0A3M9XZ13	A0A3M9Y8E3	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.805
D7B24_002287	D7B24_009589	A0A3M9XZ13	A0A3M9Y3D0	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.996
D7B24_002287	MRD1	A0A3M9XZ13	A0A3M9Y4X0	WD_REPEATS_REGION domain-containing protein.	Multiple RNA-binding domain-containing protein 1.	0.953
D7B24_002287	RPS14	A0A3M9XZ13	A0A3M9Y2U3	WD_REPEATS_REGION domain-containing protein.	Ribosomal protein S14, S11; Belongs to the universal ribosomal protein uS11 family.	0.969
D7B24_002287	RPS19	A0A3M9XZ13	A0A3M9YB42	WD_REPEATS_REGION domain-containing protein.	40S ribosomal protein S19.	0.929
D7B24_002287	RPS27	A0A3M9XZ13	A0A3M9Y249	WD_REPEATS_REGION domain-containing protein.	40S ribosomal protein S27.	0.949
D7B24_002287	RPS28A_1	A0A3M9XZ13	A0A3M9YD19	WD_REPEATS_REGION domain-containing protein.	40S ribosomal protein S28.	0.883
D7B24_002287	RPS28A_2	A0A3M9XZ13	A0A3M9Y383	WD_REPEATS_REGION domain-containing protein.	40S ribosomal protein S28.	0.883
D7B24_002287	RPS5	A0A3M9XZ13	A0A3M9YB84	WD_REPEATS_REGION domain-containing protein.	Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.	0.990
D7B24_002287	RRP5	A0A3M9XZ13	A0A3M9Y108	WD_REPEATS_REGION domain-containing protein.	rRNA bioproteinsis protein rrp5.	0.998
D7B24_004768	D7B24_002287	A0A3M9YEW0	A0A3M9XZ13	Ribosomal_S7 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.738
D7B24_004768	D7B24_007281	A0A3M9YEW0	A0A3M9Y8E3	Ribosomal_S7 domain-containing protein.	Uncharacterized protein.	0.993
D7B24_004768	D7B24_009589	A0A3M9YEW0	A0A3M9Y3D0	Ribosomal_S7 domain-containing protein.	Uncharacterized protein.	0.929
D7B24_004768	RPS0	A0A3M9YEW0	A0A3M9YFG5	Ribosomal_S7 domain-containing protein.	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	0.992
D7B24_004768	RPS14	A0A3M9YEW0	A0A3M9Y2U3	Ribosomal_S7 domain-containing protein.	Ribosomal protein S14, S11; Belongs to the universal ribosomal protein uS11 family.	0.992
D7B24_004768	RPS15	A0A3M9YEW0	A0A3M9YEV1	Ribosomal_S7 domain-containing protein.	Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.994
D7B24_004768	RPS19	A0A3M9YEW0	A0A3M9YB42	Ribosomal_S7 domain-containing protein.	40S ribosomal protein S19.	0.993
D7B24_004768	RPS27	A0A3M9YEW0	A0A3M9Y249	Ribosomal_S7 domain-containing protein.	40S ribosomal protein S27.	0.989
D7B24_004768	RPS28A_1	A0A3M9YEW0	A0A3M9YD19	Ribosomal_S7 domain-containing protein.	40S ribosomal protein S28.	0.965