20 items (Verticillium nonalfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ARB1	ABC transporter ATP-binding protein arb1. (632 aa)
	D7B24_002446	J domain-containing protein. (444 aa)
	D7B24_005928	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (196 aa)
	MEX67	Nuclear mRNA export, poly(A)+RNA binding protein. (683 aa)
	GTPBP4	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (658 aa)
	D7B24_002945	Uncharacterized protein. (281 aa)
	DNAJC21	DnaJ sub C member 21. (560 aa)
	D7B24_001894	Uncharacterized protein. (888 aa)
	NOG2	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (609 aa)
	TIF6	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family. (246 aa)
	LTV1	Protein ltv1. (428 aa)
	GSP1	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family. (218 aa)
	XPO1	Exportin-1. (1078 aa)
	RPS3	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (262 aa)
	D7B24_007872	CP-type G domain-containing protein. (643 aa)
	D7B24_007230	Uncharacterized protein. (449 aa)
	D7B24_001573	Uncharacterized protein. (784 aa)
	SDAD1	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family. (751 aa)
	RLI1	Fe-S cluster-binding ribosome biosynthesis protein. (607 aa)
	GNL3	Guanine nucleotide-binding protein-like 3. (545 aa)

Your Current Organism:

Verticillium nonalfalfae

NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARB1	D7B24_007872	A0A3M9YED7	A0A3M9Y8Z5	ABC transporter ATP-binding protein arb1.	CP-type G domain-containing protein.	0.541
ARB1	GNL3	A0A3M9YED7	A0A3M9XVR1	ABC transporter ATP-binding protein arb1.	Guanine nucleotide-binding protein-like 3.	0.617
ARB1	NOG2	A0A3M9YED7	A0A3M9Y5N0	ABC transporter ATP-binding protein arb1.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.460
ARB1	RLI1	A0A3M9YED7	A0A3M9XY13	ABC transporter ATP-binding protein arb1.	Fe-S cluster-binding ribosome biosynthesis protein.	0.928
ARB1	RPS3	A0A3M9YED7	A0A3M9Y828	ABC transporter ATP-binding protein arb1.	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	0.770
ARB1	TIF6	A0A3M9YED7	A0A3M9Y5U7	ABC transporter ATP-binding protein arb1.	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.	0.764
D7B24_001573	D7B24_002945	A0A3M9XZF9	A0A3M9Y0R2	Uncharacterized protein.	Uncharacterized protein.	0.600
D7B24_001573	D7B24_007230	A0A3M9XZF9	A0A3M9YBR6	Uncharacterized protein.	Uncharacterized protein.	0.522
D7B24_001573	D7B24_007872	A0A3M9XZF9	A0A3M9Y8Z5	Uncharacterized protein.	CP-type G domain-containing protein.	0.579
D7B24_001573	GNL3	A0A3M9XZF9	A0A3M9XVR1	Uncharacterized protein.	Guanine nucleotide-binding protein-like 3.	0.828
D7B24_001573	GTPBP4	A0A3M9XZF9	A0A3M9XZZ7	Uncharacterized protein.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.787
D7B24_001573	LTV1	A0A3M9XZF9	A0A3M9Y682	Uncharacterized protein.	Protein ltv1.	0.580
D7B24_001573	NOG2	A0A3M9XZF9	A0A3M9Y5N0	Uncharacterized protein.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.812
D7B24_001573	SDAD1	A0A3M9XZF9	A0A3M9XYD5	Uncharacterized protein.	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.	0.604
D7B24_001573	TIF6	A0A3M9XZF9	A0A3M9Y5U7	Uncharacterized protein.	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.	0.491
D7B24_002446	DNAJC21	A0A3M9YHA5	A0A3M9Y101	J domain-containing protein.	DnaJ sub C member 21.	0.517
D7B24_002446	GNL3	A0A3M9YHA5	A0A3M9XVR1	J domain-containing protein.	Guanine nucleotide-binding protein-like 3.	0.429
D7B24_002446	GTPBP4	A0A3M9YHA5	A0A3M9XZZ7	J domain-containing protein.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.448
D7B24_002945	D7B24_001573	A0A3M9Y0R2	A0A3M9XZF9	Uncharacterized protein.	Uncharacterized protein.	0.600
D7B24_002945	D7B24_005928	A0A3M9Y0R2	A0A3M9YMG9	Uncharacterized protein.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.612