42 items (Verticillium nonalfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	UTP4	U3 small nucleolar RNA-associated protein. (911 aa)
	UTP7	Small subunit (SSU) processome component. (553 aa)
	D7B24_007281	Uncharacterized protein. (248 aa)
	ECM16	Putative ATP-dependent RNA helicase DHR1. (1197 aa)
	DIM1	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (370 aa)
	D7B24_005588	Uncharacterized protein. (128 aa)
	SNU13	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (125 aa)
	D7B24_004809	Uncharacterized protein. (206 aa)
	RPS8A	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (207 aa)
	NOP58	Nucleolar protein 58. (655 aa)
	SOF1	rRNA-processing protein sof1. (448 aa)
	UTP6	U3 snoRNP protein. (416 aa)
	BMS1	Glycoside hydrolase 2 (Mannanase, beta-galactosidase). (1159 aa)
	RPS21	40S ribosomal protein S21. (87 aa)
	D7B24_005912	CBF domain-containing protein. (546 aa)
	WDR3	Dip2/Utp12 protein. (1050 aa)
	D7B24_003426	Uncharacterized protein. (940 aa)
	RRP9	Pre-rRNA processing protein. (606 aa)
	D7B24_005928	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (196 aa)
	D7B24_005981	Uncharacterized protein. (402 aa)
	D7B24_003493	WD_REPEATS_REGION domain-containing protein. (634 aa)
	MRD1	Multiple RNA-binding domain-containing protein 1. (866 aa)
	D7B24_009077	Uncharacterized protein. (200 aa)
	D7B24_008809	Uncharacterized protein. (815 aa)
	D7B24_007784	Bms1-type G domain-containing protein. (820 aa)
	KRI1	KRRI-Interacting protein 1. (690 aa)
	BFR2	rRNA-processing protein bfr2. (594 aa)
	RIOK2	Serine/threonine-protein kinase RIO2. (419 aa)
	ENP1	SnoRNA-binding rRNA-processing protein. (483 aa)
	D7B24_003649	Uncharacterized protein. (900 aa)
	D7B24_002287	WD_REPEATS_REGION domain-containing protein. (905 aa)
	RPS16	40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (143 aa)
	D7B24_002945	Uncharacterized protein. (281 aa)
	RRP5	rRNA bioproteinsis protein rrp5. (1809 aa)
	D7B24_000800	Sas10 domain-containing protein. (668 aa)
	RPS13	Ribosomal 40S subunit protein S13; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	RPS14	Ribosomal protein S14, S11; Belongs to the universal ribosomal protein uS11 family. (151 aa)
	RPP40	Ribonuclease P protein subunit p40. (338 aa)
	UTP5	Small subunit (SSU) processome component. (433 aa)
	D7B24_008870	Fcf2 domain-containing protein. (197 aa)
	UTP13	U3 small nucleolar RNA-associated protein 13. (906 aa)
	KRR1	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (319 aa)

Your Current Organism:

Verticillium nonalfalfae

NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BFR2	BMS1	A0A3M9Y7E2	A0A3M9YH12	rRNA-processing protein bfr2.	Glycoside hydrolase 2 (Mannanase, beta-galactosidase).	0.994
BFR2	D7B24_000800	A0A3M9Y7E2	A0A3M9Y136	rRNA-processing protein bfr2.	Sas10 domain-containing protein.	0.991
BFR2	D7B24_002287	A0A3M9Y7E2	A0A3M9XZ13	rRNA-processing protein bfr2.	WD_REPEATS_REGION domain-containing protein.	0.986
BFR2	D7B24_003426	A0A3M9Y7E2	A0A3M9YL87	rRNA-processing protein bfr2.	Uncharacterized protein.	0.996
BFR2	D7B24_003493	A0A3M9Y7E2	A0A3M9YPR4	rRNA-processing protein bfr2.	WD_REPEATS_REGION domain-containing protein.	0.997
BFR2	D7B24_003649	A0A3M9Y7E2	A0A3M9XWS7	rRNA-processing protein bfr2.	Uncharacterized protein.	0.562
BFR2	D7B24_005588	A0A3M9Y7E2	A0A3M9YCC7	rRNA-processing protein bfr2.	Uncharacterized protein.	0.855
BFR2	D7B24_005912	A0A3M9Y7E2	A0A3M9YJK3	rRNA-processing protein bfr2.	CBF domain-containing protein.	0.984
BFR2	D7B24_005981	A0A3M9Y7E2	A0A3M9YP46	rRNA-processing protein bfr2.	Uncharacterized protein.	0.990
BFR2	D7B24_007281	A0A3M9Y7E2	A0A3M9Y8E3	rRNA-processing protein bfr2.	Uncharacterized protein.	0.745
BFR2	D7B24_007784	A0A3M9Y7E2	A0A3M9Y755	rRNA-processing protein bfr2.	Bms1-type G domain-containing protein.	0.751
BFR2	D7B24_008809	A0A3M9Y7E2	A0A3M9Y720	rRNA-processing protein bfr2.	Uncharacterized protein.	0.532
BFR2	D7B24_008870	A0A3M9Y7E2	A0A3M9Y472	rRNA-processing protein bfr2.	Fcf2 domain-containing protein.	0.989
BFR2	D7B24_009077	A0A3M9Y7E2	A0A3M9Y5B2	rRNA-processing protein bfr2.	Uncharacterized protein.	0.986
BFR2	DIM1	A0A3M9Y7E2	A0A3M9YB91	rRNA-processing protein bfr2.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.611
BFR2	ECM16	A0A3M9Y7E2	A0A3M9Y8U5	rRNA-processing protein bfr2.	Putative ATP-dependent RNA helicase DHR1.	0.878
BFR2	ENP1	A0A3M9Y7E2	A0A3M9XW09	rRNA-processing protein bfr2.	SnoRNA-binding rRNA-processing protein.	0.984
BFR2	KRI1	A0A3M9Y7E2	A0A3M9Y7A1	rRNA-processing protein bfr2.	KRRI-Interacting protein 1.	0.678
BFR2	KRR1	A0A3M9Y7E2	A0A3M9Y4Q2	rRNA-processing protein bfr2.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.989
BFR2	MRD1	A0A3M9Y7E2	A0A3M9Y4X0	rRNA-processing protein bfr2.	Multiple RNA-binding domain-containing protein 1.	0.903