42 items (Verticillium nonalfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D7B24_001576	RNase_PH domain-containing protein. (366 aa)
	D7B24_007099	Ribosomal_L28e domain-containing protein. (321 aa)
	UTP7	Small subunit (SSU) processome component. (553 aa)
	D7B24_007186	Uncharacterized protein. (1127 aa)
	KRI1	KRRI-Interacting protein 1. (690 aa)
	D7B24_009077	Uncharacterized protein. (200 aa)
	D7B24_005981	Uncharacterized protein. (402 aa)
	NSA2	Ribosome bioproteinsis protein. (284 aa)
	D7B24_005928	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (196 aa)
	RRP9	Pre-rRNA processing protein. (606 aa)
	D7B24_003426	Uncharacterized protein. (940 aa)
	WDR3	Dip2/Utp12 protein. (1050 aa)
	RRP6	Exosome nuclease subunit. (841 aa)
	D7B24_005025	Uncharacterized protein. (181 aa)
	D7B24_005912	CBF domain-containing protein. (546 aa)
	SKI6	Exosome non-catalytic core component. (265 aa)
	RPS21	40S ribosomal protein S21. (87 aa)
	NOP58	Nucleolar protein 58. (655 aa)
	D7B24_007884	Uncharacterized protein. (916 aa)
	MRD1	Multiple RNA-binding domain-containing protein 1. (866 aa)
	KRR1	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (319 aa)
	CSL4	Exosome 3'->5 exonuclease subunit ski4 (Csl4). (211 aa)
	RRP4	Exosome non-catalytic core subunit rrp4. (353 aa)
	D7B24_008870	Fcf2 domain-containing protein. (197 aa)
	D7B24_009082	Sec2p domain-containing protein. (329 aa)
	D7B24_004424	Uncharacterized protein. (365 aa)
	D7B24_005372	Uncharacterized protein. (329 aa)
	D7B24_004269	Brix domain-containing protein. (420 aa)
	ENP1	SnoRNA-binding rRNA-processing protein. (483 aa)
	LAS1	rRNA-processing protein las1. (290 aa)
	SPB1	AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (862 aa)
	RRP40	Exosome non-catalytic core subunit rrp40. (245 aa)
	ERB1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (766 aa)
	D7B24_002287	WD_REPEATS_REGION domain-containing protein. (905 aa)
	NOP7	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (665 aa)
	D7B24_002945	Uncharacterized protein. (281 aa)
	EXOSC8	Exosome complex component RRP43. (336 aa)
	RRP5	rRNA bioproteinsis protein rrp5. (1809 aa)
	YTM1	Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (483 aa)
	RRP46	Exosome non-catalytic core subunit rrp46. (249 aa)
	D7B24_007317	Uncharacterized protein. (308 aa)
	RPP40	Ribonuclease P protein subunit p40. (338 aa)

Your Current Organism:

Verticillium nonalfalfae

NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSL4	D7B24_001576	A0A3M9Y4P7	A0A3M9Y3F6	Exosome 3'->5 exonuclease subunit ski4 (Csl4).	RNase_PH domain-containing protein.	0.989
CSL4	D7B24_002287	A0A3M9Y4P7	A0A3M9XZ13	Exosome 3'->5 exonuclease subunit ski4 (Csl4).	WD_REPEATS_REGION domain-containing protein.	0.900
CSL4	D7B24_003426	A0A3M9Y4P7	A0A3M9YL87	Exosome 3'->5 exonuclease subunit ski4 (Csl4).	Uncharacterized protein.	0.886
CSL4	D7B24_004269	A0A3M9Y4P7	A0A3M9XVS6	Exosome 3'->5 exonuclease subunit ski4 (Csl4).	Brix domain-containing protein.	0.483
CSL4	D7B24_005025	A0A3M9Y4P7	A0A3M9YK27	Exosome 3'->5 exonuclease subunit ski4 (Csl4).	Uncharacterized protein.	0.973
CSL4	D7B24_005912	A0A3M9Y4P7	A0A3M9YJK3	Exosome 3'->5 exonuclease subunit ski4 (Csl4).	CBF domain-containing protein.	0.891
CSL4	D7B24_005981	A0A3M9Y4P7	A0A3M9YP46	Exosome 3'->5 exonuclease subunit ski4 (Csl4).	Uncharacterized protein.	0.868
CSL4	D7B24_007317	A0A3M9Y4P7	A0A3M9YA10	Exosome 3'->5 exonuclease subunit ski4 (Csl4).	Uncharacterized protein.	0.980
CSL4	D7B24_008870	A0A3M9Y4P7	A0A3M9Y472	Exosome 3'->5 exonuclease subunit ski4 (Csl4).	Fcf2 domain-containing protein.	0.655
CSL4	D7B24_009077	A0A3M9Y4P7	A0A3M9Y5B2	Exosome 3'->5 exonuclease subunit ski4 (Csl4).	Uncharacterized protein.	0.851
CSL4	D7B24_009082	A0A3M9Y4P7	A0A3M9Y3X0	Exosome 3'->5 exonuclease subunit ski4 (Csl4).	Sec2p domain-containing protein.	0.476
CSL4	ENP1	A0A3M9Y4P7	A0A3M9XW09	Exosome 3'->5 exonuclease subunit ski4 (Csl4).	SnoRNA-binding rRNA-processing protein.	0.806
CSL4	EXOSC8	A0A3M9Y4P7	A0A3M9Y0Y6	Exosome 3'->5 exonuclease subunit ski4 (Csl4).	Exosome complex component RRP43.	0.983
CSL4	KRR1	A0A3M9Y4P7	A0A3M9Y4Q2	Exosome 3'->5 exonuclease subunit ski4 (Csl4).	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.870
CSL4	NOP58	A0A3M9Y4P7	A0A3M9YDU3	Exosome 3'->5 exonuclease subunit ski4 (Csl4).	Nucleolar protein 58.	0.830
CSL4	RRP4	A0A3M9Y4P7	A0A3M9Y4M6	Exosome 3'->5 exonuclease subunit ski4 (Csl4).	Exosome non-catalytic core subunit rrp4.	0.985
CSL4	RRP40	A0A3M9Y4P7	A0A3M9XXM2	Exosome 3'->5 exonuclease subunit ski4 (Csl4).	Exosome non-catalytic core subunit rrp40.	0.988
CSL4	RRP46	A0A3M9Y4P7	A0A3M9Y313	Exosome 3'->5 exonuclease subunit ski4 (Csl4).	Exosome non-catalytic core subunit rrp46.	0.980
CSL4	RRP5	A0A3M9Y4P7	A0A3M9Y108	Exosome 3'->5 exonuclease subunit ski4 (Csl4).	rRNA bioproteinsis protein rrp5.	0.805
CSL4	RRP6	A0A3M9Y4P7	A0A3M9YK91	Exosome 3'->5 exonuclease subunit ski4 (Csl4).	Exosome nuclease subunit.	0.414