STRINGSTRING
D7B24_001576 D7B24_001576 D7B24_007099 D7B24_007099 UTP7 UTP7 D7B24_007186 D7B24_007186 KRI1 KRI1 D7B24_009077 D7B24_009077 D7B24_005981 D7B24_005981 NSA2 NSA2 D7B24_005928 D7B24_005928 RRP9 RRP9 D7B24_003426 D7B24_003426 WDR3 WDR3 RRP6 RRP6 D7B24_005025 D7B24_005025 D7B24_005912 D7B24_005912 SKI6 SKI6 RPS21 RPS21 NOP58 NOP58 D7B24_007884 D7B24_007884 MRD1 MRD1 KRR1 KRR1 CSL4 CSL4 RRP4 RRP4 D7B24_008870 D7B24_008870 D7B24_009082 D7B24_009082 D7B24_004424 D7B24_004424 D7B24_005372 D7B24_005372 D7B24_004269 D7B24_004269 ENP1 ENP1 LAS1 LAS1 SPB1 SPB1 RRP40 RRP40 ERB1 ERB1 D7B24_002287 D7B24_002287 NOP7 NOP7 D7B24_002945 D7B24_002945 EXOSC8 EXOSC8 RRP5 RRP5 YTM1 YTM1 RRP46 RRP46 D7B24_007317 D7B24_007317 RPP40 RPP40
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
D7B24_001576RNase_PH domain-containing protein. (366 aa)
D7B24_007099Ribosomal_L28e domain-containing protein. (321 aa)
UTP7Small subunit (SSU) processome component. (553 aa)
D7B24_007186Uncharacterized protein. (1127 aa)
KRI1KRRI-Interacting protein 1. (690 aa)
D7B24_009077Uncharacterized protein. (200 aa)
D7B24_005981Uncharacterized protein. (402 aa)
NSA2Ribosome bioproteinsis protein. (284 aa)
D7B24_005928Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (196 aa)
RRP9Pre-rRNA processing protein. (606 aa)
D7B24_003426Uncharacterized protein. (940 aa)
WDR3Dip2/Utp12 protein. (1050 aa)
RRP6Exosome nuclease subunit. (841 aa)
D7B24_005025Uncharacterized protein. (181 aa)
D7B24_005912CBF domain-containing protein. (546 aa)
SKI6Exosome non-catalytic core component. (265 aa)
RPS2140S ribosomal protein S21. (87 aa)
NOP58Nucleolar protein 58. (655 aa)
D7B24_007884Uncharacterized protein. (916 aa)
MRD1Multiple RNA-binding domain-containing protein 1. (866 aa)
KRR1KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (319 aa)
CSL4Exosome 3'->5 exonuclease subunit ski4 (Csl4). (211 aa)
RRP4Exosome non-catalytic core subunit rrp4. (353 aa)
D7B24_008870Fcf2 domain-containing protein. (197 aa)
D7B24_009082Sec2p domain-containing protein. (329 aa)
D7B24_004424Uncharacterized protein. (365 aa)
D7B24_005372Uncharacterized protein. (329 aa)
D7B24_004269Brix domain-containing protein. (420 aa)
ENP1SnoRNA-binding rRNA-processing protein. (483 aa)
LAS1rRNA-processing protein las1. (290 aa)
SPB1AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (862 aa)
RRP40Exosome non-catalytic core subunit rrp40. (245 aa)
ERB1Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (766 aa)
D7B24_002287WD_REPEATS_REGION domain-containing protein. (905 aa)
NOP7Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (665 aa)
D7B24_002945Uncharacterized protein. (281 aa)
EXOSC8Exosome complex component RRP43. (336 aa)
RRP5rRNA bioproteinsis protein rrp5. (1809 aa)
YTM1Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (483 aa)
RRP46Exosome non-catalytic core subunit rrp46. (249 aa)
D7B24_007317Uncharacterized protein. (308 aa)
RPP40Ribonuclease P protein subunit p40. (338 aa)
Your Current Organism:
Verticillium nonalfalfae
NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d
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