37 items (Verticillium nonalfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MCM3	DNA helicase; Belongs to the MCM family. (884 aa)
	MCM5	DNA helicase; Belongs to the MCM family. (721 aa)
	RAD51	DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily. (355 aa)
	D7B24_000965	zf-RING-like domain-containing protein. (345 aa)
	RAD54	DNA-dependent ATPase protein rad54. (859 aa)
	SMC6	Structural maintenance of chromosomes protein 6. (1165 aa)
	D7B24_001708	Uncharacterized protein. (92 aa)
	D7B24_003689	MAGE domain-containing protein. (338 aa)
	SCC2	Sister chromatid cohesion protein. (1868 aa)
	D7B24_002671	Deacetylase sirtuin-type domain-containing protein. (729 aa)
	SMC5	Structural maintenance of chromosomes protein 5. (1117 aa)
	D7B24_004517	Uncharacterized protein. (393 aa)
	D7B24_007656	Uncharacterized protein. (427 aa)
	D7B24_007943	Serine/threonine-protein phosphatase. (422 aa)
	UBC2	Ubiquitin-conjugating enzyme E2 2; Belongs to the ubiquitin-conjugating enzyme family. (151 aa)
	RFA1	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (617 aa)
	FAN1	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family. (843 aa)
	MCM7	DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] (838 aa)
	D7B24_007482	WD_REPEATS_REGION domain-containing protein. (1032 aa)
	REV3L	DNA polymerase. (1686 aa)
	D7B24_003466	SP-RING-type domain-containing protein. (402 aa)
	MRE11	Meiotic recombination; Belongs to the MRE11/RAD32 family. (701 aa)
	D7B24_003634	XPGI domain-containing protein. (464 aa)
	RAD52	DNA repair protein rad52. (524 aa)
	D7B24_004435	RECA_2 domain-containing protein. (459 aa)
	D7B24_004700	Uncharacterized protein. (858 aa)
	D7B24_005339	Protein kinase domain-containing protein. (473 aa)
	D7B24_005246	Deacetylase sirtuin-type domain-containing protein. (428 aa)
	MCM2	DNA helicase; Belongs to the MCM family. (914 aa)
	D7B24_006999	ERCC4 domain-containing protein. (951 aa)
	MCM4	DNA helicase; Belongs to the MCM family. (1028 aa)
	D7B24_007211	Uncharacterized protein. (443 aa)
	D7B24_007655	Uncharacterized protein. (924 aa)
	D7B24_007076	Checkpoint protein; Belongs to the HUS1 family. (339 aa)
	MCD1	Sister chromatid cohesion protein 1. (651 aa)
	MCM6	DNA helicase; Belongs to the MCM family. (953 aa)
	RFA2	Replication factor A protein 2. (290 aa)

Your Current Organism:

Verticillium nonalfalfae

NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7B24_000965	D7B24_003466	A0A3M9Y1B1	A0A3M9YKC9	zf-RING-like domain-containing protein.	SP-RING-type domain-containing protein.	0.999
D7B24_000965	D7B24_003689	A0A3M9Y1B1	A0A3M9XZB0	zf-RING-like domain-containing protein.	MAGE domain-containing protein.	0.999
D7B24_000965	MCD1	A0A3M9Y1B1	A0A3M9Y7P7	zf-RING-like domain-containing protein.	Sister chromatid cohesion protein 1.	0.627
D7B24_000965	RFA2	A0A3M9Y1B1	A0A3M9Y7J4	zf-RING-like domain-containing protein.	Replication factor A protein 2.	0.500
D7B24_000965	SMC5	A0A3M9Y1B1	A0A3M9XX95	zf-RING-like domain-containing protein.	Structural maintenance of chromosomes protein 5.	0.999
D7B24_000965	SMC6	A0A3M9Y1B1	A0A3M9Y0X9	zf-RING-like domain-containing protein.	Structural maintenance of chromosomes protein 6.	0.999
D7B24_000965	UBC2	A0A3M9Y1B1	A0A3M9Y679	zf-RING-like domain-containing protein.	Ubiquitin-conjugating enzyme E2 2; Belongs to the ubiquitin-conjugating enzyme family.	0.434
D7B24_003466	D7B24_000965	A0A3M9YKC9	A0A3M9Y1B1	SP-RING-type domain-containing protein.	zf-RING-like domain-containing protein.	0.999
D7B24_003466	D7B24_003689	A0A3M9YKC9	A0A3M9XZB0	SP-RING-type domain-containing protein.	MAGE domain-containing protein.	0.999
D7B24_003466	D7B24_004435	A0A3M9YKC9	A0A3M9YFM1	SP-RING-type domain-containing protein.	RECA_2 domain-containing protein.	0.431
D7B24_003466	D7B24_004517	A0A3M9YKC9	A0A3M9XW95	SP-RING-type domain-containing protein.	Uncharacterized protein.	0.485
D7B24_003466	MCD1	A0A3M9YKC9	A0A3M9Y7P7	SP-RING-type domain-containing protein.	Sister chromatid cohesion protein 1.	0.691
D7B24_003466	RAD51	A0A3M9YKC9	A0A3M9Y236	SP-RING-type domain-containing protein.	DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily.	0.630
D7B24_003466	RAD52	A0A3M9YKC9	A0A3M9YGC2	SP-RING-type domain-containing protein.	DNA repair protein rad52.	0.477
D7B24_003466	SMC5	A0A3M9YKC9	A0A3M9XX95	SP-RING-type domain-containing protein.	Structural maintenance of chromosomes protein 5.	0.999
D7B24_003466	SMC6	A0A3M9YKC9	A0A3M9Y0X9	SP-RING-type domain-containing protein.	Structural maintenance of chromosomes protein 6.	0.999
D7B24_003466	UBC2	A0A3M9YKC9	A0A3M9Y679	SP-RING-type domain-containing protein.	Ubiquitin-conjugating enzyme E2 2; Belongs to the ubiquitin-conjugating enzyme family.	0.595
D7B24_003634	D7B24_004435	A0A3M9YGN1	A0A3M9YFM1	XPGI domain-containing protein.	RECA_2 domain-containing protein.	0.789
D7B24_003634	D7B24_004517	A0A3M9YGN1	A0A3M9XW95	XPGI domain-containing protein.	Uncharacterized protein.	0.724
D7B24_003634	D7B24_004700	A0A3M9YGN1	A0A3M9YEB3	XPGI domain-containing protein.	Uncharacterized protein.	0.484