STRINGSTRING
D7B24_004424 D7B24_004424 D7B24_004236 D7B24_004236 D7B24_005372 D7B24_005372 GNL3 GNL3 D7B24_004269 D7B24_004269 ENP1 ENP1 D7B24_004397 D7B24_004397 NSUN5 NSUN5 LAS1 LAS1 D7B24_003649 D7B24_003649 SPB1 SPB1 UTP11 UTP11 D7B24_002946 D7B24_002946 RRP40 RRP40 RVB2 RVB2 D7B24_002405 D7B24_002405 RLI1 RLI1 ROK1 ROK1 ERB1 ERB1 D7B24_002287 D7B24_002287 RRP8 RRP8 LSM5 LSM5 RPL35 RPL35 NOP2 NOP2 D7B24_003127 D7B24_003127 GTPBP4 GTPBP4 RPS16 RPS16 D7B24_001277 D7B24_001277 D7B24_001246 D7B24_001246 D7B24_002061 D7B24_002061 D7B24_001034 D7B24_001034 NOP7 NOP7 D7B24_002945 D7B24_002945 GAR1_1 GAR1_1 EXOSC8 EXOSC8 DNAJC21 DNAJC21 RRP5 RRP5 RPL7 RPL7 EMG1 EMG1 D7B24_000800 D7B24_000800 D7B24_000883 D7B24_000883 D7B24_001224 D7B24_001224 D7B24_002053 D7B24_002053 YTM1 YTM1 D7B24_000326 D7B24_000326 RPL8B RPL8B IMP3 IMP3 RPS13 RPS13 D7B24_000733 D7B24_000733 RPS7 RPS7 KRE33 KRE33 RPS14 RPS14 RRP46 RRP46 MTR4 MTR4 RPS28A_2 RPS28A_2 D7B24_009589 D7B24_009589 D7B24_001576 D7B24_001576 LSM8 LSM8 RPP40 RPP40 D7B24_009082 D7B24_009082 D7B24_009062 D7B24_009062 NOL6 NOL6 TSR3 TSR3 UTP5 UTP5 D7B24_008870 D7B24_008870 MAK5 MAK5 UTP13 UTP13 UTP10 UTP10 LSM4 LSM4 RRP4 RRP4 CSL4 CSL4 KRR1 KRR1 MRD1 MRD1 MDN1 MDN1 D7B24_009077 D7B24_009077 D7B24_008254 D7B24_008254 NOP56 NOP56 D7B24_008330 D7B24_008330 NOP4 NOP4 NOP14 NOP14 DBP7 DBP7 D7B24_007586 D7B24_007586 CBF5 CBF5 D7B24_007780 D7B24_007780 D7B24_008809 D7B24_008809 D7B24_007784 D7B24_007784 KRI1 KRI1 BFR2 BFR2 RIOK2 RIOK2 D7B24_007186 D7B24_007186 NOP16 NOP16 UTP4 UTP4 UTP7 UTP7 D7B24_007281 D7B24_007281 PXR1 PXR1 RPL10A RPL10A WDR36 WDR36 DBP3 DBP3 ECM16 ECM16 D7B24_006564 D7B24_006564 UTP25 UTP25 RRP36 RRP36 ABT1 ABT1 D7B24_007099 D7B24_007099 RPL30 RPL30 DBP8 DBP8 D7B24_007383 D7B24_007383 D7B24_007317 D7B24_007317 D7B24_006302 D7B24_006302 D7B24_007884 D7B24_007884 D7B24_007789 D7B24_007789 D7B24_006279 D7B24_006279 RRP12 RRP12 MRH4 MRH4 DBP10 DBP10 NOP1 NOP1 D7B24_005829 D7B24_005829 EFG1 EFG1 DIM1 DIM1 MTR3 MTR3 REXO4 REXO4 D7B24_007230 D7B24_007230 D7B24_005588 D7B24_005588 SNU13 SNU13 NHP2 NHP2 D7B24_005402 D7B24_005402 D7B24_005854 D7B24_005854 D7B24_005151 D7B24_005151 D7B24_004809 D7B24_004809 REX3 REX3 RPS28A_1 RPS28A_1 D7B24_005626 D7B24_005626 D7B24_005856 D7B24_005856 DDX51 DDX51 RPS8A RPS8A SPB4 SPB4 NOP58 NOP58 RRP3 RRP3 D7B24_004360 D7B24_004360 D7B24_005848 D7B24_005848 SOF1 SOF1 NOP10 NOP10 DBP2 DBP2 IMP4 IMP4 D7B24_003616 D7B24_003616 D7B24_003207 D7B24_003207 D7B24_002701 D7B24_002701 NOP9 NOP9 NOB1 NOB1 D7B24_004177 D7B24_004177 UTP6 UTP6 D7B24_002121 D7B24_002121 PRP43 PRP43 UTP20 UTP20 XRN2 XRN2 BMS1 BMS1 D7B24_001452 D7B24_001452 D7B24_002446 D7B24_002446 D7B24_003600 D7B24_003600 LSM3 LSM3 RPS21 RPS21 SKI6 SKI6 HAS1 HAS1 GRC3 GRC3 D7B24_005912 D7B24_005912 ESF1 ESF1 FAL1 FAL1 LSM7 LSM7 D7B24_005025 D7B24_005025 D7B24_000655 D7B24_000655 D7B24_000685 D7B24_000685 RRP6 RRP6 D7B24_007515 D7B24_007515 RPF2 RPF2 WDR3 WDR3 LSM6 LSM6 D7B24_003426 D7B24_003426 D7B24_000047 D7B24_000047 D7B24_007520 D7B24_007520 D7B24_005953 D7B24_005953 RRP9 RRP9 NOP12 NOP12 D7B24_005928 D7B24_005928 D7B24_000157 D7B24_000157 D7B24_005046 D7B24_005046 NSA2 NSA2 D7B24_005981 D7B24_005981 D7B24_006002 D7B24_006002 D7B24_003431 D7B24_003431 D7B24_003493 D7B24_003493 D7B24_000012 D7B24_000012 D7B24_000063 D7B24_000063
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
D7B24_004424Uncharacterized protein. (365 aa)
D7B24_004236Uncharacterized protein. (340 aa)
D7B24_005372Uncharacterized protein. (329 aa)
GNL3Guanine nucleotide-binding protein-like 3. (545 aa)
D7B24_004269Brix domain-containing protein. (420 aa)
ENP1SnoRNA-binding rRNA-processing protein. (483 aa)
D7B24_004397Uncharacterized protein. (269 aa)
NSUN5Putative 28S rRNA (Cytosine-C(5))-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (584 aa)
LAS1rRNA-processing protein las1. (290 aa)
D7B24_003649Uncharacterized protein. (900 aa)
SPB1AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (862 aa)
UTP11Small subunit (SSU) processome component. (269 aa)
D7B24_002946Uncharacterized protein. (81 aa)
RRP40Exosome non-catalytic core subunit rrp40. (245 aa)
RVB2RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. (470 aa)
D7B24_002405WD_REPEATS_REGION domain-containing protein. (468 aa)
RLI1Fe-S cluster-binding ribosome biosynthesis protein. (607 aa)
ROK1RNA-dependent ATPase rok1. (768 aa)
ERB1Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (766 aa)
D7B24_002287WD_REPEATS_REGION domain-containing protein. (905 aa)
RRP8Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family. (572 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (80 aa)
RPL3560S ribosomal protein L35. (125 aa)
NOP2rRNA (Cytosine-C5-)-methyltransferase nop2; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (766 aa)
D7B24_003127Uncharacterized protein. (941 aa)
GTPBP4Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (658 aa)
RPS1640S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (143 aa)
D7B24_001277SpoU_sub_bind domain-containing protein. (619 aa)
D7B24_001246Ipi1_N domain-containing protein. (339 aa)
D7B24_002061RNase III domain-containing protein. (413 aa)
D7B24_001034Uncharacterized protein. (221 aa)
NOP7Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (665 aa)
D7B24_002945Uncharacterized protein. (281 aa)
GAR1_1H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (155 aa)
EXOSC8Exosome complex component RRP43. (336 aa)
DNAJC21DnaJ sub C member 21. (560 aa)
RRP5rRNA bioproteinsis protein rrp5. (1809 aa)
RPL760S ribosomal protein L7. (262 aa)
EMG118S rRNA pseudouridine methyltransferase. (276 aa)
D7B24_000800Sas10 domain-containing protein. (668 aa)
D7B24_000883PDCD2_C domain-containing protein. (431 aa)
D7B24_001224rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (619 aa)
D7B24_002053Uncharacterized protein. (383 aa)
YTM1Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (483 aa)
D7B24_000326HAD_SAK_1 domain-containing protein. (586 aa)
RPL8B60S ribosomal protein L8B. (261 aa)
IMP3Small subunit (SSU) processome component. (183 aa)
RPS13Ribosomal 40S subunit protein S13; Belongs to the universal ribosomal protein uS15 family. (151 aa)
D7B24_00073325S rRNA adenine-N(1) methyltransferase; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of an adenine present in helix 65 in 25S rRNA; Belongs to the BMT2 family. (294 aa)
RPS740S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (201 aa)
KRE33RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1065 aa)
RPS14Ribosomal protein S14, S11; Belongs to the universal ribosomal protein uS11 family. (151 aa)
RRP46Exosome non-catalytic core subunit rrp46. (249 aa)
MTR4ATP-dependent RNA helicase mtr4. (1106 aa)
RPS28A_240S ribosomal protein S28. (68 aa)
D7B24_009589Uncharacterized protein. (876 aa)
D7B24_001576RNase_PH domain-containing protein. (366 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (99 aa)
RPP40Ribonuclease P protein subunit p40. (338 aa)
D7B24_009082Sec2p domain-containing protein. (329 aa)
D7B24_009062WD_REPEATS_REGION domain-containing protein. (968 aa)
NOL6U3 small nucleolar RNA-associated protein 22. (1102 aa)
TSR3Ribosome biogenesis protein TSR3; Ribosome biogenesis protein required for processing 35S pre- rRNA at site D; Belongs to the TSR3 family. (412 aa)
UTP5Small subunit (SSU) processome component. (433 aa)
D7B24_008870Fcf2 domain-containing protein. (197 aa)
MAK5ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. (787 aa)
UTP13U3 small nucleolar RNA-associated protein 13. (906 aa)
UTP10SnoRNA-binding rRNA-processing protein utp10. (1809 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (180 aa)
RRP4Exosome non-catalytic core subunit rrp4. (353 aa)
CSL4Exosome 3'->5 exonuclease subunit ski4 (Csl4). (211 aa)
KRR1KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (319 aa)
MRD1Multiple RNA-binding domain-containing protein 1. (866 aa)
MDN1AAA ATPase midasin. (4969 aa)
D7B24_009077Uncharacterized protein. (200 aa)
D7B24_008254Uncharacterized protein. (471 aa)
NOP56snoRNP complex protein nop56. (510 aa)
D7B24_008330FtsJ domain-containing protein. (202 aa)
NOP4RNA recognition motif-containing protein. (785 aa)
NOP14Nucleolar complex protein 14. (915 aa)
DBP7ATP-dependent RNA helicase dbp7; Belongs to the DEAD box helicase family. (770 aa)
D7B24_007586BUD22 domain-containing protein. (496 aa)
CBF5Centromere/microtubule-binding protein cbf5. (465 aa)
D7B24_007780Uncharacterized protein. (735 aa)
D7B24_008809Uncharacterized protein. (815 aa)
D7B24_007784Bms1-type G domain-containing protein. (820 aa)
KRI1KRRI-Interacting protein 1. (690 aa)
BFR2rRNA-processing protein bfr2. (594 aa)
RIOK2Serine/threonine-protein kinase RIO2. (419 aa)
D7B24_007186Uncharacterized protein. (1127 aa)
NOP16Nucleolar protein 16. (231 aa)
UTP4U3 small nucleolar RNA-associated protein. (911 aa)
UTP7Small subunit (SSU) processome component. (553 aa)
D7B24_007281Uncharacterized protein. (248 aa)
PXR1Telomerase inhibitor. (362 aa)
RPL10ARibosomal protein; Belongs to the universal ribosomal protein uL1 family. (217 aa)
WDR36WD repeat-containing protein 36. (1042 aa)
DBP3RNA-dependent ATPase; Belongs to the DEAD box helicase family. (595 aa)
ECM16Putative ATP-dependent RNA helicase DHR1. (1197 aa)
D7B24_006564DUF2431 domain-containing protein. (402 aa)
UTP25U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (773 aa)
RRP36rRNA bioproteinsis protein rrp36. (299 aa)
ABT1Activator of basal transcription 1. (315 aa)
D7B24_007099Ribosomal_L28e domain-containing protein. (321 aa)
RPL3060S ribosomal protein L30. (110 aa)
DBP8Putative RNA helicase; Belongs to the DEAD box helicase family. (556 aa)
D7B24_007383zf-LYAR domain-containing protein. (387 aa)
D7B24_007317Uncharacterized protein. (308 aa)
D7B24_006302RIX1 domain-containing protein. (761 aa)
D7B24_007884Uncharacterized protein. (916 aa)
D7B24_007789Uncharacterized protein. (710 aa)
D7B24_006279TRUD domain-containing protein. (801 aa)
RRP12Pre-rRNA processing protein. (1321 aa)
MRH4RNA helicase. (468 aa)
DBP10ATP-dependent RNA helicase DBP10. (902 aa)
NOP1Small subunit processome complex component. (325 aa)
D7B24_005829Uncharacterized protein. (734 aa)
EFG118S rRNA maturation protein. (283 aa)
DIM1rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (370 aa)
MTR33'-5'-exoribonuclease. (291 aa)
REXO4REX4, RNA exonuclease 4. (340 aa)
D7B24_007230Uncharacterized protein. (449 aa)
D7B24_005588Uncharacterized protein. (128 aa)
SNU13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (125 aa)
NHP2Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (232 aa)
D7B24_005402Exonuclease domain-containing protein. (449 aa)
D7B24_005854Uncharacterized protein. (694 aa)
D7B24_005151Uncharacterized protein. (403 aa)
D7B24_004809Uncharacterized protein. (206 aa)
REX3RNA exonuclease 3. (687 aa)
RPS28A_140S ribosomal protein S28. (68 aa)
D7B24_005626RNase III domain-containing protein. (426 aa)
D7B24_005856Uncharacterized protein. (237 aa)
DDX51ATP-dependent RNA helicase ddx51; Belongs to the DEAD box helicase family. (775 aa)
RPS8A40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (207 aa)
SPB4RNA helicase. (632 aa)
NOP58Nucleolar protein 58. (655 aa)
RRP3Ribosomal RNA processing protein; Belongs to the DEAD box helicase family. (487 aa)
D7B24_004360Uncharacterized protein. (339 aa)
D7B24_005848Uncharacterized protein. (585 aa)
SOF1rRNA-processing protein sof1. (448 aa)
NOP10snoRNP complex protein. (66 aa)
DBP2ATP-dependent RNA helicase dbp2; Belongs to the DEAD box helicase family. (560 aa)
IMP4SnoRNA-binding rRNA-processing protein imp4. (293 aa)
D7B24_003616HIT-type domain-containing protein. (546 aa)
D7B24_003207Exonuclease domain-containing protein. (227 aa)
D7B24_002701Uncharacterized protein. (480 aa)
NOP9Nucleolar protein 9. (748 aa)
NOB1Nin1 binding protein. (472 aa)
D7B24_004177Brix domain-containing protein. (462 aa)
UTP6U3 snoRNP protein. (416 aa)
D7B24_002121RRM domain-containing protein. (386 aa)
PRP43DEAH-box ATP-dependent RNA helicase prp43. (770 aa)
UTP20U3 snoRNP protein. (2640 aa)
XRN25'-3' exoribonuclease 2. (821 aa)
BMS1Glycoside hydrolase 2 (Mannanase, beta-galactosidase). (1159 aa)
D7B24_001452Uncharacterized protein. (1028 aa)
D7B24_002446J domain-containing protein. (444 aa)
D7B24_003600Uncharacterized protein. (233 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
RPS2140S ribosomal protein S21. (87 aa)
SKI6Exosome non-catalytic core component. (265 aa)
HAS1RNA helicase. (706 aa)
GRC3Polynucleotide 5'-hydroxyl-kinase grc3. (743 aa)
D7B24_005912CBF domain-containing protein. (546 aa)
ESF1Pre-rRNA-processing protein esf1. (699 aa)
FAL1RNA helicase; Belongs to the DEAD box helicase family. (401 aa)
LSM7Sm-like protein lsm7. (141 aa)
D7B24_005025Uncharacterized protein. (181 aa)
D7B24_000655Uncharacterized protein. (214 aa)
D7B24_000685Uncharacterized protein. (185 aa)
RRP6Exosome nuclease subunit. (841 aa)
D7B24_007515Uncharacterized protein. (1404 aa)
RPF2rRNA-binding ribosome biosynthesis protein rpf2. (317 aa)
WDR3Dip2/Utp12 protein. (1050 aa)
LSM6U4/U6-U5 snRNP complex subunit lsm6. (84 aa)
D7B24_003426Uncharacterized protein. (940 aa)
D7B24_000047PPM-type phosphatase domain-containing protein. (786 aa)
D7B24_007520Uncharacterized protein. (342 aa)
D7B24_005953rRNA-processing protein; Involved in nucleolar integrity and required for processing of the pre-rRNA for the 60S ribosome subunit. Belongs to the CGR1 family. (118 aa)
RRP9Pre-rRNA processing protein. (606 aa)
NOP12Nucleolar protein 12. (550 aa)
D7B24_005928Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (196 aa)
D7B24_000157Uncharacterized protein. (710 aa)
D7B24_005046Uncharacterized protein. (413 aa)
NSA2Ribosome bioproteinsis protein. (284 aa)
D7B24_005981Uncharacterized protein. (402 aa)
D7B24_006002WD_REPEATS_REGION domain-containing protein. (598 aa)
D7B24_003431CMP/dCMP-type deaminase domain-containing protein. (177 aa)
D7B24_003493WD_REPEATS_REGION domain-containing protein. (634 aa)
D7B24_000012Exonuclease domain-containing protein. (727 aa)
D7B24_000063WD_REPEATS_REGION domain-containing protein. (535 aa)
Your Current Organism:
Verticillium nonalfalfae
NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d
Server load: medium (46%) [HD]