25 items (Verticillium nonalfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	THOC3	THO complex subunit 3. (339 aa)
	D7B24_001965	Uncharacterized protein. (795 aa)
	D7B24_003153	Guanylate kinase-like domain-containing protein. (858 aa)
	D7B24_001708	Uncharacterized protein. (92 aa)
	D7B24_000837	Uncharacterized protein. (581 aa)
	IPO5	Importin-5. (1096 aa)
	D7B24_000773	FHA domain-containing protein. (315 aa)
	D7B24_009095	Uncharacterized protein. (548 aa)
	THO2	THO complex subunit 2. (2304 aa)
	PCID2	PCI domain-containing protein 2. (452 aa)
	D7B24_007869	Uncharacterized protein. (429 aa)
	D7B24_007870	Uncharacterized protein. (679 aa)
	D7B24_007377	Uncharacterized protein. (352 aa)
	D7B24_008456	Uncharacterized protein. (536 aa)
	RPB4	RNA polymerase B. (160 aa)
	D7B24_000135	Uncharacterized protein. (213 aa)
	MEX67	Nuclear mRNA export, poly(A)+RNA binding protein. (683 aa)
	D7B24_003544	Uncharacterized protein. (519 aa)
	D7B24_000703	Uncharacterized protein. (1100 aa)
	IWS1	Transcription factor iws1. (426 aa)
	D7B24_003018	Uncharacterized protein. (601 aa)
	D7B24_005647	RRM domain-containing protein. (256 aa)
	D7B24_006381	Uncharacterized protein. (107 aa)
	GLE2	RNA export factor gle2. (358 aa)
	D7B24_006991	SAP domain-containing protein. (281 aa)

Your Current Organism:

Verticillium nonalfalfae

NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7B24_000135	D7B24_001965	A0A3M9YQB9	A0A3M9XYR2	Uncharacterized protein.	Uncharacterized protein.	0.850
D7B24_000135	D7B24_003018	A0A3M9YQB9	A0A3M9YH76	Uncharacterized protein.	Uncharacterized protein.	0.487
D7B24_000135	D7B24_003153	A0A3M9YQB9	A0A3M9XZS4	Uncharacterized protein.	Guanylate kinase-like domain-containing protein.	0.999
D7B24_000135	D7B24_005647	A0A3M9YQB9	A0A3M9YD42	Uncharacterized protein.	RRM domain-containing protein.	0.974
D7B24_000135	D7B24_006381	A0A3M9YQB9	A0A3M9YBG3	Uncharacterized protein.	Uncharacterized protein.	0.753
D7B24_000135	D7B24_006991	A0A3M9YQB9	A0A3M9Y9U9	Uncharacterized protein.	SAP domain-containing protein.	0.753
D7B24_000135	D7B24_007377	A0A3M9YQB9	A0A3M9Y8I5	Uncharacterized protein.	Uncharacterized protein.	0.999
D7B24_000135	GLE2	A0A3M9YQB9	A0A3M9YA93	Uncharacterized protein.	RNA export factor gle2.	0.553
D7B24_000135	MEX67	A0A3M9YQB9	A0A3M9YNW4	Uncharacterized protein.	Nuclear mRNA export, poly(A)+RNA binding protein.	0.970
D7B24_000135	THO2	A0A3M9YQB9	A0A3M9Y4T5	Uncharacterized protein.	THO complex subunit 2.	0.999
D7B24_000135	THOC3	A0A3M9YQB9	A0A3M9Y9J4	Uncharacterized protein.	THO complex subunit 3.	0.999
D7B24_000703	GLE2	A0A3M9YJL3	A0A3M9YA93	Uncharacterized protein.	RNA export factor gle2.	0.511
D7B24_000703	IPO5	A0A3M9YJL3	A0A3M9Y123	Uncharacterized protein.	Importin-5.	0.758
D7B24_000773	D7B24_001965	A0A3M9Y167	A0A3M9XYR2	FHA domain-containing protein.	Uncharacterized protein.	0.880
D7B24_000837	D7B24_001965	A0A3M9Y0Y0	A0A3M9XYR2	Uncharacterized protein.	Uncharacterized protein.	0.639
D7B24_000837	D7B24_003018	A0A3M9Y0Y0	A0A3M9YH76	Uncharacterized protein.	Uncharacterized protein.	0.454
D7B24_000837	D7B24_005647	A0A3M9Y0Y0	A0A3M9YD42	Uncharacterized protein.	RRM domain-containing protein.	0.669
D7B24_000837	MEX67	A0A3M9Y0Y0	A0A3M9YNW4	Uncharacterized protein.	Nuclear mRNA export, poly(A)+RNA binding protein.	0.541
D7B24_000837	RPB4	A0A3M9Y0Y0	A0A3M9Y9H0	Uncharacterized protein.	RNA polymerase B.	0.560
D7B24_000837	THO2	A0A3M9Y0Y0	A0A3M9Y4T5	Uncharacterized protein.	THO complex subunit 2.	0.755