46 items (Verticillium nonalfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RPS4	40S ribosomal protein S4. (275 aa)
	D7B24_005045	Uncharacterized protein. (280 aa)
	RPS9	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (191 aa)
	RPL11	60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family. (172 aa)
	D7B24_003600	Uncharacterized protein. (233 aa)
	D7B24_001780	Uncharacterized protein. (116 aa)
	RPS18	Ribosomal 40S subunit protein S18B. (228 aa)
	RPL37A	Ribosomal protein L37; Binds to the 23S rRNA. (97 aa)
	D7B24_000047	PPM-type phosphatase domain-containing protein. (786 aa)
	RPF2	rRNA-binding ribosome biosynthesis protein rpf2. (317 aa)
	D7B24_005372	Uncharacterized protein. (329 aa)
	D7B24_004269	Brix domain-containing protein. (420 aa)
	D7B24_003697	FAD-binding PCMH-type domain-containing protein. (610 aa)
	D7B24_002561	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family. (249 aa)
	D7B24_002292	S4 RNA-binding domain-containing protein. (211 aa)
	MRTO4	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (247 aa)
	RRP5	rRNA bioproteinsis protein rrp5. (1809 aa)
	EMG1	18S rRNA pseudouridine methyltransferase. (276 aa)
	RPL2A	60S ribosomal protein L2A. (254 aa)
	RPL9B	60S ribosomal protein L9B. (193 aa)
	IMP3	Small subunit (SSU) processome component. (183 aa)
	D7B24_000850	Uncharacterized protein. (153 aa)
	RPS13	Ribosomal 40S subunit protein S13; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	D7B24_002065	Uncharacterized protein. (332 aa)
	RPS14	Ribosomal protein S14, S11; Belongs to the universal ribosomal protein uS11 family. (151 aa)
	D7B24_004177	Brix domain-containing protein. (462 aa)
	RPL25	60S ribosomal protein L25. (157 aa)
	RPL12	60S ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (165 aa)
	D7B24_009589	Uncharacterized protein. (876 aa)
	D7B24_009607	Uncharacterized protein. (207 aa)
	RPP0	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (313 aa)
	MRD1	Multiple RNA-binding domain-containing protein 1. (866 aa)
	NOG2	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (609 aa)
	D7B24_007281	Uncharacterized protein. (248 aa)
	MRPL11	54S ribosomal protein L11, mitochondrial; Belongs to the universal ribosomal protein uL11 family. (152 aa)
	D7B24_007884	Uncharacterized protein. (916 aa)
	RPL5	60S ribosomal protein L5. (299 aa)
	D7B24_005721	Uncharacterized protein. (303 aa)
	RPS5	Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (212 aa)
	MRPL16	Mitochondrial ribosomal large subunit component; Belongs to the universal ribosomal protein uL16 family. (250 aa)
	D7B24_007230	Uncharacterized protein. (449 aa)
	D7B24_005720	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family. (160 aa)
	D7B24_004768	Ribosomal_S7 domain-containing protein. (380 aa)
	D7B24_004513	Uncharacterized protein. (319 aa)
	IMP4	SnoRNA-binding rRNA-processing protein imp4. (293 aa)
	D7B24_005532	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (128 aa)

Your Current Organism:

Verticillium nonalfalfae

NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7B24_000047	D7B24_002065	A0A3M9YLB4	A0A3M9Y2E0	PPM-type phosphatase domain-containing protein.	Uncharacterized protein.	0.645
D7B24_000047	D7B24_002292	A0A3M9YLB4	A0A3M9XXZ5	PPM-type phosphatase domain-containing protein.	S4 RNA-binding domain-containing protein.	0.645
D7B24_000047	D7B24_004177	A0A3M9YLB4	A0A3M9YFX0	PPM-type phosphatase domain-containing protein.	Brix domain-containing protein.	0.779
D7B24_000047	D7B24_004269	A0A3M9YLB4	A0A3M9XVS6	PPM-type phosphatase domain-containing protein.	Brix domain-containing protein.	0.643
D7B24_000047	D7B24_007230	A0A3M9YLB4	A0A3M9YBR6	PPM-type phosphatase domain-containing protein.	Uncharacterized protein.	0.677
D7B24_000047	D7B24_007281	A0A3M9YLB4	A0A3M9Y8E3	PPM-type phosphatase domain-containing protein.	Uncharacterized protein.	0.433
D7B24_000047	D7B24_007884	A0A3M9YLB4	A0A3M9YA85	PPM-type phosphatase domain-containing protein.	Uncharacterized protein.	0.785
D7B24_000047	D7B24_009589	A0A3M9YLB4	A0A3M9Y3D0	PPM-type phosphatase domain-containing protein.	Uncharacterized protein.	0.588
D7B24_000047	EMG1	A0A3M9YLB4	A0A3M9Y116	PPM-type phosphatase domain-containing protein.	18S rRNA pseudouridine methyltransferase.	0.867
D7B24_000047	IMP3	A0A3M9YLB4	A0A3M9Y274	PPM-type phosphatase domain-containing protein.	Small subunit (SSU) processome component.	0.867
D7B24_000047	IMP4	A0A3M9YLB4	A0A3M9YF14	PPM-type phosphatase domain-containing protein.	SnoRNA-binding rRNA-processing protein imp4.	0.802
D7B24_000047	MRD1	A0A3M9YLB4	A0A3M9Y4X0	PPM-type phosphatase domain-containing protein.	Multiple RNA-binding domain-containing protein 1.	0.695
D7B24_000047	MRTO4	A0A3M9YLB4	A0A3M9Y008	PPM-type phosphatase domain-containing protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.551
D7B24_000047	NOG2	A0A3M9YLB4	A0A3M9Y5N0	PPM-type phosphatase domain-containing protein.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.757
D7B24_000047	RPF2	A0A3M9YLB4	A0A3M9YL32	PPM-type phosphatase domain-containing protein.	rRNA-binding ribosome biosynthesis protein rpf2.	0.814
D7B24_000047	RPS14	A0A3M9YLB4	A0A3M9Y2U3	PPM-type phosphatase domain-containing protein.	Ribosomal protein S14, S11; Belongs to the universal ribosomal protein uS11 family.	0.504
D7B24_000047	RPS9	A0A3M9YLB4	A0A3M9YJY6	PPM-type phosphatase domain-containing protein.	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	0.661
D7B24_000047	RRP5	A0A3M9YLB4	A0A3M9Y108	PPM-type phosphatase domain-containing protein.	rRNA bioproteinsis protein rrp5.	0.805
D7B24_000850	D7B24_001780	A0A3M9Y2A7	A0A3M9YHF2	Uncharacterized protein.	Uncharacterized protein.	0.984
D7B24_000850	D7B24_002065	A0A3M9Y2A7	A0A3M9Y2E0	Uncharacterized protein.	Uncharacterized protein.	0.959