STRINGSTRING
PRP18 PRP18 TMA20 TMA20 D7B24_007585 D7B24_007585 CWC2 CWC2 TIF34 TIF34 D7B24_007647 D7B24_007647 D7B24_007590 D7B24_007590 D7B24_007725 D7B24_007725 LUC7 LUC7 PRP24 PRP24 D7B24_007990 D7B24_007990 D7B24_009440 D7B24_009440 D7B24_009117 D7B24_009117 MDN1 MDN1 D7B24_009623 D7B24_009623 D7B24_008848 D7B24_008848 MRD1 MRD1 LSM4 LSM4 RPP0 RPP0 D7B24_009037 D7B24_009037 D7B24_009589 D7B24_009589 RPS28A_2 RPS28A_2 RPL25 RPL25 D7B24_000520 D7B24_000520 SMD2 SMD2 RPS14 RPS14 D7B24_009624 D7B24_009624 RPS27 RPS27 KIN28 KIN28 D7B24_001649 D7B24_001649 RRP5 RRP5 D7B24_000882 D7B24_000882 D7B24_001261 D7B24_001261 D7B24_001265 D7B24_001265 MRTO4 MRTO4 D7B24_001949 D7B24_001949 GTPBP4 GTPBP4 D7B24_002287 D7B24_002287 NLE1 NLE1 D7B24_004404 D7B24_004404 D7B24_002940 D7B24_002940 NIP1 NIP1 RPL38 RPL38 EIF3H EIF3H PRP8 PRP8 EIF4B EIF4B ISY1 ISY1 CDC73 CDC73 D7B24_004765 D7B24_004765 D7B24_007795 D7B24_007795 D7B24_007281 D7B24_007281 PRPF6 PRPF6 D7B24_007872 D7B24_007872 D7B24_006656 D7B24_006656 RPB4 RPB4 D7B24_007026 D7B24_007026 D7B24_006858 D7B24_006858 CLF1 CLF1 D7B24_007884 D7B24_007884 RPL5 RPL5 D7B24_007603 D7B24_007603 D7B24_007533 D7B24_007533 PRPF31 PRPF31 RPS19 RPS19 RPS5 RPS5 NIP7 NIP7 TIF32 TIF32 D7B24_005873 D7B24_005873 D7B24_007230 D7B24_007230 TIF11 TIF11 RPS28A_1 RPS28A_1 D7B24_004668 D7B24_004668 D7B24_004728 D7B24_004728 INT6 INT6 D7B24_004148 D7B24_004148 RSM19 RSM19 RPS15 RPS15 D7B24_004768 D7B24_004768 D7B24_003591 D7B24_003591 D7B24_003576 D7B24_003576 SME1 SME1 D7B24_003616 D7B24_003616 D7B24_004452 D7B24_004452 D7B24_005613 D7B24_005613 RPS0 RPS0 TIF35 TIF35 D7B24_004177 D7B24_004177 D7B24_002485 D7B24_002485 D7B24_001446 D7B24_001446 D7B24_002679 D7B24_002679 DSK1 DSK1 PATL1 PATL1 D7B24_009218 D7B24_009218 D7B24_003760 D7B24_003760 D7B24_000668 D7B24_000668 SMG1 SMG1 D7B24_000698 D7B24_000698 D7B24_009263 D7B24_009263 D7B24_000319 D7B24_000319 D7B24_002476 D7B24_002476 RPF2 RPF2 PRT1 PRT1 DHX38 DHX38 D7B24_000093 D7B24_000093 D7B24_000157 D7B24_000157 HCR1 HCR1 D7B24_005899 D7B24_005899 PRPF39 PRPF39 BRR2 BRR2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PRP18mRNA splicing protein prp18. (347 aa)
TMA20Translation machinery-associated protein 20; Involved in translation; Belongs to the TMA20 family. (193 aa)
D7B24_007585Uncharacterized protein. (528 aa)
CWC2Pre-mRNA-splicing factor. (405 aa)
TIF34Eukaryotic translation initiation factor 3 subunit I; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (333 aa)
D7B24_007647PSP domain-containing protein. (636 aa)
D7B24_007590Tudor domain-containing protein. (309 aa)
D7B24_007725Eukaryotic translation initiation factor 3 subunit F; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (366 aa)
LUC7Splicing factor. (271 aa)
PRP24Splicing factor. (1082 aa)
D7B24_007990WD_REPEATS_REGION domain-containing protein. (531 aa)
D7B24_009440Uncharacterized protein. (603 aa)
D7B24_009117Uncharacterized protein. (549 aa)
MDN1AAA ATPase midasin. (4969 aa)
D7B24_009623Uncharacterized protein. (1004 aa)
D7B24_008848SCA7 domain-containing protein. (417 aa)
MRD1Multiple RNA-binding domain-containing protein 1. (866 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (180 aa)
RPP060S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (313 aa)
D7B24_009037Tr-type G domain-containing protein. (983 aa)
D7B24_009589Uncharacterized protein. (876 aa)
RPS28A_240S ribosomal protein S28. (68 aa)
RPL2560S ribosomal protein L25. (157 aa)
D7B24_000520Uncharacterized protein. (596 aa)
SMD2Small nuclear ribonucleoprotein Sm D2. (117 aa)
RPS14Ribosomal protein S14, S11; Belongs to the universal ribosomal protein uS11 family. (151 aa)
D7B24_009624Uncharacterized protein. (397 aa)
RPS2740S ribosomal protein S27. (238 aa)
KIN28TFIIH complex serine/threonine-protein kinase subunit kin28; Belongs to the protein kinase superfamily. (413 aa)
D7B24_001649W2 domain-containing protein. (428 aa)
RRP5rRNA bioproteinsis protein rrp5. (1809 aa)
D7B24_000882Eukaryotic translation initiation factor 3 subunit K; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (231 aa)
D7B24_001261Uncharacterized protein. (327 aa)
D7B24_001265U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (196 aa)
MRTO4Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (247 aa)
D7B24_001949Uncharacterized protein. (328 aa)
GTPBP4Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (658 aa)
D7B24_002287WD_REPEATS_REGION domain-containing protein. (905 aa)
NLE1Notchless protein 1. (515 aa)
D7B24_004404Protein kinase domain-containing protein. (267 aa)
D7B24_002940Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (417 aa)
NIP1Eukaryotic translation initiation factor 3 subunit C; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (872 aa)
RPL3860S ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family. (80 aa)
EIF3HEukaryotic translation initiation factor 3 subunit H; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (365 aa)
PRP8Pre-mRNA-splicing factor 8. (2875 aa)
EIF4BEukaryotic translation initiation factor 4B. (565 aa)
ISY1NineTeen Complex (NTC) component. (255 aa)
CDC73Accessory factor associated with RNA polymerase II. (411 aa)
D7B24_004765Eukaryotic translation initiation factor 3 subunit L; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (474 aa)
D7B24_007795KH domain-containing protein. (524 aa)
D7B24_007281Uncharacterized protein. (248 aa)
PRPF6Pre-mRNA-processing factor 6. (927 aa)
D7B24_007872CP-type G domain-containing protein. (643 aa)
D7B24_006656Protein kinase domain-containing protein. (409 aa)
RPB4RNA polymerase B. (160 aa)
D7B24_007026Plus3 domain-containing protein. (607 aa)
D7B24_006858Protein kinase domain-containing protein. (432 aa)
CLF1NineTeen Complex (NTC) component. (673 aa)
D7B24_007884Uncharacterized protein. (916 aa)
RPL560S ribosomal protein L5. (299 aa)
D7B24_007603GST N-terminal domain-containing protein. (332 aa)
D7B24_007533eIF2B_5 domain-containing protein. (319 aa)
PRPF31U4/U6 small nuclear ribonucleoprotein Prp31. (613 aa)
RPS1940S ribosomal protein S19. (152 aa)
RPS5Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (212 aa)
NIP760S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (185 aa)
TIF32Eukaryotic translation initiation factor 3 subunit A; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (1072 aa)
D7B24_005873NmrA domain-containing protein. (305 aa)
D7B24_007230Uncharacterized protein. (449 aa)
TIF11Translation initiation factor 1A; Belongs to the eIF-1A family. (194 aa)
RPS28A_140S ribosomal protein S28. (68 aa)
D7B24_004668Uncharacterized protein. (577 aa)
D7B24_004728PH domain-containing protein. (861 aa)
INT6Eukaryotic translation initiation factor 3 subunit E; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (438 aa)
D7B24_004148Matrin-type domain-containing protein. (241 aa)
RSM19Mitochondrial ribosomal small subunit component; Belongs to the universal ribosomal protein uS19 family. (90 aa)
RPS15Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (203 aa)
D7B24_004768Ribosomal_S7 domain-containing protein. (380 aa)
D7B24_003591Uncharacterized protein. (160 aa)
D7B24_003576Sm domain-containing protein. (89 aa)
SME1Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (94 aa)
D7B24_003616HIT-type domain-containing protein. (546 aa)
D7B24_004452Uncharacterized protein. (263 aa)
D7B24_005613Protein kinase domain-containing protein. (435 aa)
RPS040S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (288 aa)
TIF35Eukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA. (297 aa)
D7B24_004177Brix domain-containing protein. (462 aa)
D7B24_002485Uncharacterized protein. (107 aa)
D7B24_001446Sm domain-containing protein. (210 aa)
D7B24_00267960S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (202 aa)
DSK1Serine/threonine protein kinase, CMGC group. (657 aa)
PATL1Protein PAT1 1. (846 aa)
D7B24_009218NmrA domain-containing protein. (300 aa)
D7B24_003760Uncharacterized protein. (268 aa)
D7B24_000668RRM domain-containing protein. (333 aa)
SMG1Small nuclear ribonucleoprotein G. (85 aa)
D7B24_000698WD_REPEATS_REGION domain-containing protein. (500 aa)
D7B24_009263PWI domain-containing protein. (749 aa)
D7B24_000319Uncharacterized protein. (406 aa)
D7B24_002476Uncharacterized protein. (357 aa)
RPF2rRNA-binding ribosome biosynthesis protein rpf2. (317 aa)
PRT1Eukaryotic translation initiation factor 3 subunit B; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (745 aa)
DHX38Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16. (963 aa)
D7B24_000093Eukaryotic translation initiation factor 3 subunit D; mRNA cap-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. In the eIF-3 complex, eif3d specifically recognizes and binds the 7- methylguanosine cap of a subset of mRNAs. (581 aa)
D7B24_000157Uncharacterized protein. (710 aa)
HCR1Eukaryotic translation initiation factor 3 subunit J; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (275 aa)
D7B24_005899SF3b1 domain-containing protein. (1223 aa)
PRPF39PRP39 pre-mRNA processing factor 39. (576 aa)
BRR2DEIH-box ATPase. (2237 aa)
Your Current Organism:
Verticillium nonalfalfae
NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d
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