42 items (Verticillium nonalfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RPP2B	60S acidic ribosomal protein P2; Belongs to the eukaryotic ribosomal protein P1/P2 family. (110 aa)
	D7B24_005166	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family. (109 aa)
	D7B24_006414	Uncharacterized protein. (135 aa)
	RPL28	60S ribosomal protein L28; Belongs to the universal ribosomal protein uL15 family. (149 aa)
	RPL13	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (214 aa)
	RPL3	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (391 aa)
	RPL5	60S ribosomal protein L5. (299 aa)
	RPL30	60S ribosomal protein L30. (110 aa)
	D7B24_002355	Ribosomal_L5_C domain-containing protein. (356 aa)
	RPL2A	60S ribosomal protein L2A. (254 aa)
	D7B24_001229	Uncharacterized protein. (186 aa)
	RPL8B	60S ribosomal protein L8B. (261 aa)
	RPL25	60S ribosomal protein L25. (157 aa)
	RPL38	60S ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family. (80 aa)
	D7B24_003697	FAD-binding PCMH-type domain-containing protein. (610 aa)
	RPL24	60S ribosomal protein L24. (175 aa)
	RPL36	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (106 aa)
	RPL37A	Ribosomal protein L37; Binds to the 23S rRNA. (97 aa)
	RPL35B	60S ribosomal protein L35B. (109 aa)
	RPL15	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (337 aa)
	RPL35	60S ribosomal protein L35. (125 aa)
	RPL22	60S ribosomal protein L22. (126 aa)
	RPL12	60S ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (165 aa)
	RPP0	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (313 aa)
	D7B24_002679	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (202 aa)
	RPL31	60S ribosomal protein L31. (154 aa)
	D7B24_009112	Uncharacterized protein. (910 aa)
	D7B24_008613	Ribosomal_L28e domain-containing protein. (158 aa)
	D7B24_008333	Ribosomal_L18e/L15P domain-containing protein. (195 aa)
	RPL26A	60S ribosomal protein L26A. (136 aa)
	RPL34	60S ribosomal protein L34. (116 aa)
	D7B24_009111	Ribos_L4_asso_C domain-containing protein. (352 aa)
	RPL20	60S ribosomal protein L20. (174 aa)
	RPL29	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (63 aa)
	RPL17	60S ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family. (185 aa)
	RPL10A	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (217 aa)
	RPL7	60S ribosomal protein L7. (262 aa)
	RPL16B	60S ribosomal protein L16B; Belongs to the universal ribosomal protein uL13 family. (202 aa)
	RPL11	60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family. (172 aa)
	RPL32	60S ribosomal protein L32. (131 aa)
	D7B24_004992	Uncharacterized protein. (160 aa)
	D7B24_005060	Ribosomal_L14e domain-containing protein. (147 aa)

Your Current Organism:

Verticillium nonalfalfae

NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7B24_001229	D7B24_002355	A0A3M9Y1E1	A0A3M9Y118	Uncharacterized protein.	Ribosomal_L5_C domain-containing protein.	0.971
D7B24_001229	D7B24_002679	A0A3M9Y1E1	A0A3M9YGW0	Uncharacterized protein.	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.	0.988
D7B24_001229	D7B24_003697	A0A3M9Y1E1	A0A3M9XVW2	Uncharacterized protein.	FAD-binding PCMH-type domain-containing protein.	0.988
D7B24_001229	D7B24_004992	A0A3M9Y1E1	A0A3M9YKH5	Uncharacterized protein.	Uncharacterized protein.	0.986
D7B24_001229	D7B24_005060	A0A3M9Y1E1	A0A3M9YLP2	Uncharacterized protein.	Ribosomal_L14e domain-containing protein.	0.990
D7B24_001229	D7B24_005166	A0A3M9Y1E1	A0A3M9YCM4	Uncharacterized protein.	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.989
D7B24_001229	D7B24_006414	A0A3M9Y1E1	A0A3M9YC53	Uncharacterized protein.	Uncharacterized protein.	0.991
D7B24_001229	D7B24_008613	A0A3M9Y1E1	A0A3M9Y4E3	Uncharacterized protein.	Ribosomal_L28e domain-containing protein.	0.984
D7B24_001229	D7B24_009111	A0A3M9Y1E1	A0A3M9Y752	Uncharacterized protein.	Ribos_L4_asso_C domain-containing protein.	0.980
D7B24_001229	D7B24_009112	A0A3M9Y1E1	A0A3M9Y3Z4	Uncharacterized protein.	Uncharacterized protein.	0.980
D7B24_001229	RPL11	A0A3M9Y1E1	A0A3M9YIE0	Uncharacterized protein.	60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.	0.989
D7B24_001229	RPL12	A0A3M9Y1E1	A0A3M9Y3B4	Uncharacterized protein.	60S ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.	0.977
D7B24_001229	RPL13	A0A3M9Y1E1	A0A3M9YB68	Uncharacterized protein.	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	0.992
D7B24_001229	RPL15	A0A3M9Y1E1	A0A3M9XZ43	Uncharacterized protein.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.985
D7B24_001229	RPL16B	A0A3M9Y1E1	A0A3M9Y9J8	Uncharacterized protein.	60S ribosomal protein L16B; Belongs to the universal ribosomal protein uL13 family.	0.987
D7B24_001229	RPL17	A0A3M9Y1E1	A0A3M9Y876	Uncharacterized protein.	60S ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family.	0.993
D7B24_001229	RPL20	A0A3M9Y1E1	A0A3M9Y761	Uncharacterized protein.	60S ribosomal protein L20.	0.989
D7B24_001229	RPL22	A0A3M9Y1E1	A0A3M9Y398	Uncharacterized protein.	60S ribosomal protein L22.	0.983
D7B24_001229	RPL24	A0A3M9Y1E1	A0A3M9YPH0	Uncharacterized protein.	60S ribosomal protein L24.	0.992
D7B24_001229	RPL25	A0A3M9Y1E1	A0A3M9Y324	Uncharacterized protein.	60S ribosomal protein L25.	0.994