31 items (Verticillium nonalfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RPS8A	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (207 aa)
	RPS28A_1	40S ribosomal protein S28. (68 aa)
	RPS25	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (93 aa)
	D7B24_005588	Uncharacterized protein. (128 aa)
	RPS5	Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (212 aa)
	RPS19	40S ribosomal protein S19. (152 aa)
	D7B24_005721	Uncharacterized protein. (303 aa)
	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1. (316 aa)
	D7B24_007008	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (63 aa)
	D7B24_006963	Uncharacterized protein. (535 aa)
	RPS3	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (262 aa)
	D7B24_008795	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (64 aa)
	RPS2	40S ribosomal protein; Belongs to the universal ribosomal protein uS5 family. (260 aa)
	RPS28A_2	40S ribosomal protein S28. (68 aa)
	RPS14	Ribosomal protein S14, S11; Belongs to the universal ribosomal protein uS11 family. (151 aa)
	RPS7	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (201 aa)
	D7B24_003853	eIF2A domain-containing protein. (718 aa)
	D7B24_004034	S10_plectin domain-containing protein. (167 aa)
	RPS16	40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (143 aa)
	RPS27	40S ribosomal protein S27. (238 aa)
	RPS13	Ribosomal 40S subunit protein S13; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	RPS23	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (141 aa)
	RPS26	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (121 aa)
	RPS4	40S ribosomal protein S4. (275 aa)
	RPS9	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (191 aa)
	RPS21	40S ribosomal protein S21. (87 aa)
	PATL1	Protein PAT1 1. (846 aa)
	RPS0	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (288 aa)
	RPS20	40S ribosomal protein S20. (116 aa)
	RPS15	Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (203 aa)
	D7B24_005720	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family. (160 aa)

Your Current Organism:

Verticillium nonalfalfae

NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7B24_004034	D7B24_005588	A0A3M9XWT1	A0A3M9YCC7	S10_plectin domain-containing protein.	Uncharacterized protein.	0.993
D7B24_004034	D7B24_005720	A0A3M9XWT1	A0A3M9YDI0	S10_plectin domain-containing protein.	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	0.994
D7B24_004034	D7B24_005721	A0A3M9XWT1	A0A3M9YB09	S10_plectin domain-containing protein.	Uncharacterized protein.	0.993
D7B24_004034	D7B24_006963	A0A3M9XWT1	A0A3M9Y895	S10_plectin domain-containing protein.	Uncharacterized protein.	0.999
D7B24_004034	D7B24_007008	A0A3M9XWT1	A0A3M9Y8J9	S10_plectin domain-containing protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.989
D7B24_004034	D7B24_008795	A0A3M9XWT1	A0A3M9Y4Q1	S10_plectin domain-containing protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.989
D7B24_004034	GNB2L1	A0A3M9XWT1	A0A3M9Y958	S10_plectin domain-containing protein.	Guanine nucleotide-binding protein subunit beta-2-like 1.	0.998
D7B24_004034	RPS0	A0A3M9XWT1	A0A3M9YFG5	S10_plectin domain-containing protein.	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	0.999
D7B24_004034	RPS13	A0A3M9XWT1	A0A3M9Y2B8	S10_plectin domain-containing protein.	Ribosomal 40S subunit protein S13; Belongs to the universal ribosomal protein uS15 family.	0.999
D7B24_004034	RPS14	A0A3M9XWT1	A0A3M9Y2U3	S10_plectin domain-containing protein.	Ribosomal protein S14, S11; Belongs to the universal ribosomal protein uS11 family.	0.999
D7B24_004034	RPS15	A0A3M9XWT1	A0A3M9YEV1	S10_plectin domain-containing protein.	Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.999
D7B24_004034	RPS16	A0A3M9XWT1	A0A3M9XZZ9	S10_plectin domain-containing protein.	40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family.	0.999
D7B24_004034	RPS19	A0A3M9XWT1	A0A3M9YB42	S10_plectin domain-containing protein.	40S ribosomal protein S19.	0.999
D7B24_004034	RPS2	A0A3M9XWT1	A0A3M9Y3A6	S10_plectin domain-containing protein.	40S ribosomal protein; Belongs to the universal ribosomal protein uS5 family.	0.999
D7B24_004034	RPS20	A0A3M9XWT1	A0A3M9YEZ9	S10_plectin domain-containing protein.	40S ribosomal protein S20.	0.999
D7B24_004034	RPS21	A0A3M9XWT1	A0A3M9YIV9	S10_plectin domain-containing protein.	40S ribosomal protein S21.	0.891
D7B24_004034	RPS23	A0A3M9XWT1	A0A3M9YNF5	S10_plectin domain-containing protein.	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	0.999
D7B24_004034	RPS25	A0A3M9XWT1	A0A3M9YD01	S10_plectin domain-containing protein.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.999
D7B24_004034	RPS26	A0A3M9XWT1	A0A3M9YKV1	S10_plectin domain-containing protein.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.999
D7B24_004034	RPS27	A0A3M9XWT1	A0A3M9Y249	S10_plectin domain-containing protein.	40S ribosomal protein S27.	0.999