STRINGSTRING
ECM16 ECM16 WDR36 WDR36 NOC2 NOC2 UTP7 UTP7 UTP4 UTP4 NOP16 NOP16 RPS3 RPS3 RIOK2 RIOK2 KRI1 KRI1 D7B24_007784 D7B24_007784 D7B24_007586 D7B24_007586 LTV1 LTV1 NOP14 NOP14 NOP56 NOP56 NOG2 NOG2 D7B24_009077 D7B24_009077 MDN1 MDN1 MRD1 MRD1 KRR1 KRR1 UTP13 UTP13 NOL6 NOL6 D7B24_009062 D7B24_009062 D7B24_009589 D7B24_009589 RPS2 RPS2 KRE33 KRE33 RPS7 RPS7 IMP3 IMP3 D7B24_000326 D7B24_000326 YTM1 YTM1 D7B24_002053 D7B24_002053 D7B24_000800 D7B24_000800 RRP5 RRP5 CKB1 CKB1 NOP7 NOP7 GTPBP4 GTPBP4 D7B24_001573 D7B24_001573 D7B24_002287 D7B24_002287 ERB1 ERB1 UTP11 UTP11 SPB1 SPB1 D7B24_003865 D7B24_003865 LAS1 LAS1 D7B24_004397 D7B24_004397 ENP1 ENP1 D7B24_004269 D7B24_004269 GNL3 GNL3 D7B24_004424 D7B24_004424 D7B24_000157 D7B24_000157 NSA2 NSA2 D7B24_005981 D7B24_005981 D7B24_006002 D7B24_006002 D7B24_003493 D7B24_003493 DIM1 DIM1 NIP7 NIP7 SNU13 SNU13 D7B24_005854 D7B24_005854 NOP58 NOP58 D7B24_005139 D7B24_005139 D7B24_004360 D7B24_004360 SOF1 SOF1 IMP4 IMP4 NOB1 NOB1 D7B24_004177 D7B24_004177 UTP6 UTP6 UTP20 UTP20 BMS1 BMS1 D7B24_005912 D7B24_005912 WDR3 WDR3 D7B24_003426 D7B24_003426 D7B24_000047 D7B24_000047 RRP9 RRP9 D7B24_005928 D7B24_005928 NOP1 NOP1 PUF6 PUF6 D7B24_007884 D7B24_007884 CKB2 CKB2 D7B24_007099 D7B24_007099
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ECM16Putative ATP-dependent RNA helicase DHR1. (1197 aa)
WDR36WD repeat-containing protein 36. (1042 aa)
NOC2Nucleolar Complex 2 protein. (805 aa)
UTP7Small subunit (SSU) processome component. (553 aa)
UTP4U3 small nucleolar RNA-associated protein. (911 aa)
NOP16Nucleolar protein 16. (231 aa)
RPS340S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (262 aa)
RIOK2Serine/threonine-protein kinase RIO2. (419 aa)
KRI1KRRI-Interacting protein 1. (690 aa)
D7B24_007784Bms1-type G domain-containing protein. (820 aa)
D7B24_007586BUD22 domain-containing protein. (496 aa)
LTV1Protein ltv1. (428 aa)
NOP14Nucleolar complex protein 14. (915 aa)
NOP56snoRNP complex protein nop56. (510 aa)
NOG2Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (609 aa)
D7B24_009077Uncharacterized protein. (200 aa)
MDN1AAA ATPase midasin. (4969 aa)
MRD1Multiple RNA-binding domain-containing protein 1. (866 aa)
KRR1KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (319 aa)
UTP13U3 small nucleolar RNA-associated protein 13. (906 aa)
NOL6U3 small nucleolar RNA-associated protein 22. (1102 aa)
D7B24_009062WD_REPEATS_REGION domain-containing protein. (968 aa)
D7B24_009589Uncharacterized protein. (876 aa)
RPS240S ribosomal protein; Belongs to the universal ribosomal protein uS5 family. (260 aa)
KRE33RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1065 aa)
RPS740S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (201 aa)
IMP3Small subunit (SSU) processome component. (183 aa)
D7B24_000326HAD_SAK_1 domain-containing protein. (586 aa)
YTM1Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (483 aa)
D7B24_002053Uncharacterized protein. (383 aa)
D7B24_000800Sas10 domain-containing protein. (668 aa)
RRP5rRNA bioproteinsis protein rrp5. (1809 aa)
CKB1Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (340 aa)
NOP7Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (665 aa)
GTPBP4Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (658 aa)
D7B24_001573Uncharacterized protein. (784 aa)
D7B24_002287WD_REPEATS_REGION domain-containing protein. (905 aa)
ERB1Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (766 aa)
UTP11Small subunit (SSU) processome component. (269 aa)
SPB1AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (862 aa)
D7B24_003865HMG box domain-containing protein. (348 aa)
LAS1rRNA-processing protein las1. (290 aa)
D7B24_004397Uncharacterized protein. (269 aa)
ENP1SnoRNA-binding rRNA-processing protein. (483 aa)
D7B24_004269Brix domain-containing protein. (420 aa)
GNL3Guanine nucleotide-binding protein-like 3. (545 aa)
D7B24_004424Uncharacterized protein. (365 aa)
D7B24_000157Uncharacterized protein. (710 aa)
NSA2Ribosome bioproteinsis protein. (284 aa)
D7B24_005981Uncharacterized protein. (402 aa)
D7B24_006002WD_REPEATS_REGION domain-containing protein. (598 aa)
D7B24_003493WD_REPEATS_REGION domain-containing protein. (634 aa)
DIM1rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (370 aa)
NIP760S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (185 aa)
SNU13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (125 aa)
D7B24_005854Uncharacterized protein. (694 aa)
NOP58Nucleolar protein 58. (655 aa)
D7B24_005139Uncharacterized protein. (389 aa)
D7B24_004360Uncharacterized protein. (339 aa)
SOF1rRNA-processing protein sof1. (448 aa)
IMP4SnoRNA-binding rRNA-processing protein imp4. (293 aa)
NOB1Nin1 binding protein. (472 aa)
D7B24_004177Brix domain-containing protein. (462 aa)
UTP6U3 snoRNP protein. (416 aa)
UTP20U3 snoRNP protein. (2640 aa)
BMS1Glycoside hydrolase 2 (Mannanase, beta-galactosidase). (1159 aa)
D7B24_005912CBF domain-containing protein. (546 aa)
WDR3Dip2/Utp12 protein. (1050 aa)
D7B24_003426Uncharacterized protein. (940 aa)
D7B24_000047PPM-type phosphatase domain-containing protein. (786 aa)
RRP9Pre-rRNA processing protein. (606 aa)
D7B24_005928Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (196 aa)
NOP1Small subunit processome complex component. (325 aa)
PUF6Pumilio domain member 6. (708 aa)
D7B24_007884Uncharacterized protein. (916 aa)
CKB2Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (256 aa)
D7B24_007099Ribosomal_L28e domain-containing protein. (321 aa)
Your Current Organism:
Verticillium nonalfalfae
NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d
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