25 items (Verticillium nonalfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D7B24_004269	Brix domain-containing protein. (420 aa)
	D7B24_004397	Uncharacterized protein. (269 aa)
	LAS1	rRNA-processing protein las1. (290 aa)
	SPB1	AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (862 aa)
	ERB1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (766 aa)
	D7B24_001573	Uncharacterized protein. (784 aa)
	NSA2	Ribosome bioproteinsis protein. (284 aa)
	GTPBP4	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (658 aa)
	NOP7	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (665 aa)
	YTM1	Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (483 aa)
	MDN1	AAA ATPase midasin. (4969 aa)
	NOG2	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (609 aa)
	NOP16	Nucleolar protein 16. (231 aa)
	NOC2	Nucleolar Complex 2 protein. (805 aa)
	D7B24_007099	Ribosomal_L28e domain-containing protein. (321 aa)
	D7B24_007884	Uncharacterized protein. (916 aa)
	PUF6	Pumilio domain member 6. (708 aa)
	NIP7	60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (185 aa)
	D7B24_005854	Uncharacterized protein. (694 aa)
	D7B24_004360	Uncharacterized protein. (339 aa)
	D7B24_004177	Brix domain-containing protein. (462 aa)
	D7B24_005928	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (196 aa)
	D7B24_000157	Uncharacterized protein. (710 aa)
	D7B24_004424	Uncharacterized protein. (365 aa)
	GNL3	Guanine nucleotide-binding protein-like 3. (545 aa)

Your Current Organism:

Verticillium nonalfalfae

NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7B24_000157	ERB1	A0A3M9YMK8	A0A3M9XYB3	Uncharacterized protein.	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.462
D7B24_000157	GNL3	A0A3M9YMK8	A0A3M9XVR1	Uncharacterized protein.	Guanine nucleotide-binding protein-like 3.	0.848
D7B24_000157	GTPBP4	A0A3M9YMK8	A0A3M9XZZ7	Uncharacterized protein.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.853
D7B24_000157	NOC2	A0A3M9YMK8	A0A3M9Y8H9	Uncharacterized protein.	Nucleolar Complex 2 protein.	0.411
D7B24_000157	NOG2	A0A3M9YMK8	A0A3M9Y5N0	Uncharacterized protein.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.901
D7B24_000157	NOP7	A0A3M9YMK8	A0A3M9Y0K6	Uncharacterized protein.	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.614
D7B24_000157	NSA2	A0A3M9YMK8	A0A3M9YN29	Uncharacterized protein.	Ribosome bioproteinsis protein.	0.586
D7B24_000157	YTM1	A0A3M9YMK8	A0A3M9Y1X1	Uncharacterized protein.	Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.872
D7B24_001573	D7B24_004177	A0A3M9XZF9	A0A3M9YFX0	Uncharacterized protein.	Brix domain-containing protein.	0.453
D7B24_001573	D7B24_004269	A0A3M9XZF9	A0A3M9XVS6	Uncharacterized protein.	Brix domain-containing protein.	0.443
D7B24_001573	D7B24_005854	A0A3M9XZF9	A0A3M9YCK8	Uncharacterized protein.	Uncharacterized protein.	0.850
D7B24_001573	D7B24_007099	A0A3M9XZF9	A0A3M9Y9H6	Uncharacterized protein.	Ribosomal_L28e domain-containing protein.	0.530
D7B24_001573	D7B24_007884	A0A3M9XZF9	A0A3M9YA85	Uncharacterized protein.	Uncharacterized protein.	0.664
D7B24_001573	ERB1	A0A3M9XZF9	A0A3M9XYB3	Uncharacterized protein.	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.862
D7B24_001573	GNL3	A0A3M9XZF9	A0A3M9XVR1	Uncharacterized protein.	Guanine nucleotide-binding protein-like 3.	0.828
D7B24_001573	GTPBP4	A0A3M9XZF9	A0A3M9XZZ7	Uncharacterized protein.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.787
D7B24_001573	NIP7	A0A3M9XZF9	A0A3M9YBL1	Uncharacterized protein.	60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.455
D7B24_001573	NOC2	A0A3M9XZF9	A0A3M9Y8H9	Uncharacterized protein.	Nucleolar Complex 2 protein.	0.827
D7B24_001573	NOG2	A0A3M9XZF9	A0A3M9Y5N0	Uncharacterized protein.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.812
D7B24_001573	NOP7	A0A3M9XZF9	A0A3M9Y0K6	Uncharacterized protein.	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.676