16 items (Verticillium nonalfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D7B24_002676	SLD3 domain-containing protein. (909 aa)
	D7B24_003647	Uncharacterized protein. (812 aa)
	D7B24_001634	Cnn_1N domain-containing protein. (850 aa)
	MCM5	DNA helicase; Belongs to the MCM family. (721 aa)
	MCM3	DNA helicase; Belongs to the MCM family. (884 aa)
	D7B24_007828	PHD-type domain-containing protein. (869 aa)
	MCM6	DNA helicase; Belongs to the MCM family. (953 aa)
	MCM4	DNA helicase; Belongs to the MCM family. (1028 aa)
	D7B24_007649	AAA_16 domain-containing protein. (538 aa)
	MCM2	DNA helicase; Belongs to the MCM family. (914 aa)
	D7B24_004700	Uncharacterized protein. (858 aa)
	GINS1	DNA replication complex GINS protein PSF1. (223 aa)
	D7B24_003603	Uncharacterized protein. (394 aa)
	ORC2	Origin recognition complex subunit 2. (555 aa)
	D7B24_005973	ORC_WH_C domain-containing protein. (760 aa)
	MCM7	DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] (838 aa)

Your Current Organism:

Verticillium nonalfalfae

NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7B24_001634	D7B24_002676	A0A3M9Y0R7	A0A3M9XXA1	Cnn_1N domain-containing protein.	SLD3 domain-containing protein.	0.652
D7B24_001634	D7B24_003647	A0A3M9Y0R7	A0A3M9XXE3	Cnn_1N domain-containing protein.	Uncharacterized protein.	0.655
D7B24_001634	D7B24_004700	A0A3M9Y0R7	A0A3M9YEB3	Cnn_1N domain-containing protein.	Uncharacterized protein.	0.992
D7B24_001634	D7B24_007828	A0A3M9Y0R7	A0A3M9Y6B7	Cnn_1N domain-containing protein.	PHD-type domain-containing protein.	0.470
D7B24_001634	GINS1	A0A3M9Y0R7	A0A3M9YFS8	Cnn_1N domain-containing protein.	DNA replication complex GINS protein PSF1.	0.999
D7B24_001634	MCM2	A0A3M9Y0R7	A0A3M9Y970	Cnn_1N domain-containing protein.	DNA helicase; Belongs to the MCM family.	0.991
D7B24_001634	MCM3	A0A3M9Y0R7	A0A3M9Y5U3	Cnn_1N domain-containing protein.	DNA helicase; Belongs to the MCM family.	0.990
D7B24_001634	MCM4	A0A3M9Y0R7	A0A3M9Y8F1	Cnn_1N domain-containing protein.	DNA helicase; Belongs to the MCM family.	0.992
D7B24_001634	MCM5	A0A3M9Y0R7	A0A3M9Y4R3	Cnn_1N domain-containing protein.	DNA helicase; Belongs to the MCM family.	0.992
D7B24_001634	MCM6	A0A3M9Y0R7	A0A3M9Y7P1	Cnn_1N domain-containing protein.	DNA helicase; Belongs to the MCM family.	0.979
D7B24_001634	MCM7	A0A3M9Y0R7	A0A3M9YLY9	Cnn_1N domain-containing protein.	DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...]	0.989
D7B24_002676	D7B24_001634	A0A3M9XXA1	A0A3M9Y0R7	SLD3 domain-containing protein.	Cnn_1N domain-containing protein.	0.652
D7B24_002676	D7B24_003647	A0A3M9XXA1	A0A3M9XXE3	SLD3 domain-containing protein.	Uncharacterized protein.	0.968
D7B24_002676	D7B24_004700	A0A3M9XXA1	A0A3M9YEB3	SLD3 domain-containing protein.	Uncharacterized protein.	0.930
D7B24_002676	GINS1	A0A3M9XXA1	A0A3M9YFS8	SLD3 domain-containing protein.	DNA replication complex GINS protein PSF1.	0.725
D7B24_002676	MCM2	A0A3M9XXA1	A0A3M9Y970	SLD3 domain-containing protein.	DNA helicase; Belongs to the MCM family.	0.850
D7B24_002676	MCM4	A0A3M9XXA1	A0A3M9Y8F1	SLD3 domain-containing protein.	DNA helicase; Belongs to the MCM family.	0.724
D7B24_002676	MCM5	A0A3M9XXA1	A0A3M9Y4R3	SLD3 domain-containing protein.	DNA helicase; Belongs to the MCM family.	0.705
D7B24_002676	MCM6	A0A3M9XXA1	A0A3M9Y7P1	SLD3 domain-containing protein.	DNA helicase; Belongs to the MCM family.	0.872
D7B24_002676	MCM7	A0A3M9XXA1	A0A3M9YLY9	SLD3 domain-containing protein.	DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...]	0.715